Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3330 |
Symbol | |
ID | 5324214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3527751 |
End bp | 3528428 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640792281 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001328986 |
Protein GI | 150398519 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.648103 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.907597 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGAAGA TGCAAGGCGG GGCGAAAGGC AGAAACGGGG CTGCAGGCCG TGCGGAGCGG CCTCTGCAGC GCGATCCCGA GCGCACGCGC GCCTCGATCC TCGCCGCCGC GACCCAGGAG TTTGCCGAAA ATGGCATAGG TGGCGCGCGT GTGGACGCCA TTGCCGAGCG TGCGGGCATC AACAAGCGGA TGCTCTATCA CTACTTCGGC GACAAGGAGC AGCTTTACCT TGCGGTCCTG GAAGAGGCTT ACGTGGGCAT CAGAACGGCC GAGAAATCCC TTAACCTCAG TGACTTGGAG CCTGAGCAGG GAATTGCCGA GCTCGCCATG TTCACCTGGG GCTACTTCCT GGAGCATCCG GAATTTCTCA GTCTTCTCGG CACCGAGAAC CTGCATCGGG CGCGCTGGCT GCGCCAATCG ACGCGCCTCA AGGAATTGCA TTCGAGCTTT ATCGACAAGC TGTCCGACCT TCTCCAGCGC GGCAGGAAGG AGGGGCTCTT CCGGCCGGAT GTCGACCCGC TGAACCTTTA TCTGACGATC GCCGCCCTGG GCTATTTCTA CCTTTCCAAT CAGTACACGC TGTCGACGAT CTTTGGCCGC GACCTCATGG ACAAGAGCAA TCTCGACGTC TGGAAGCGCC ATATCGTCCA CGTCACGCTG GCGTCCATCC GAGGCTGA
|
Protein sequence | MEKMQGGAKG RNGAAGRAER PLQRDPERTR ASILAAATQE FAENGIGGAR VDAIAERAGI NKRMLYHYFG DKEQLYLAVL EEAYVGIRTA EKSLNLSDLE PEQGIAELAM FTWGYFLEHP EFLSLLGTEN LHRARWLRQS TRLKELHSSF IDKLSDLLQR GRKEGLFRPD VDPLNLYLTI AALGYFYLSN QYTLSTIFGR DLMDKSNLDV WKRHIVHVTL ASIRG
|
| |