Gene Smed_3321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3321 
Symbol 
ID5324205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3518696 
End bp3519418 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content63% 
IMG OID640792272 
ProductGntR domain-containing protein 
Protein accessionYP_001328977 
Protein GI150398510 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.580884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACGACG TAACATTGAA ACTGAAACCG GCGCGGCGGG AGAGGCTCGC AGACGTTCTC 
TACGGACAGA TCCTCGAACA GATCGTAAGC GGCCAGATGG CCGAAGGCGC GAAACTGCCG
TCGGAAGCGC ATATCTGCCG CGACTTTCAA GTTTCCCGTC CGGTCGTGCG AGAGGCGCTG
ATGCGGTTGC AGGCCGACGG GCTGGTCGTG TCGCGCCAGG GGATCGGCAC CTTCGTCAAA
TCGCGTCCGT CCGACAAGCT CACCAGTCTC GCCGCCTCGG CCGAGATCGC GAGCTATCTC
AGGGCTTTCG AGCCCCGGCT CGCGCTCGAG ACGGAGTGTG CGGGACTTGC CGCGATGCGC
CGTACAAAGG CCCAGCTCAA CCAGATAGGC GAGGCGCTGT CGGCCTTGGA AGGCGCTTTT
GCGCGCGGCG AAACCGGATG GGAAGAGGAC TTCGCCTTTC ACCACGCCGT GGCTGAGGCT
GCGGGAAACG AACTTTTTCC GCGACTTCTG GAGGATTTGC GTGAAATTCT TAGCGGCTCG
ATGCGCATGG CGCTCGGTCT GACGCGGCAG GGCTCCGATG ACCGCCGCCG CCGTGTCCGG
GAAGAGCACC GCAAGATCTA CTCTGCCATT TCCGGCCAGA ACCGGGATCT CGCCCGCCTT
TACATGCGCT ACCATCTGAC GGAATCGCGC GCCCGTATCA CCGGGTCCCA TGGCGATCTC
TGA
 
Protein sequence
MNDVTLKLKP ARRERLADVL YGQILEQIVS GQMAEGAKLP SEAHICRDFQ VSRPVVREAL 
MRLQADGLVV SRQGIGTFVK SRPSDKLTSL AASAEIASYL RAFEPRLALE TECAGLAAMR
RTKAQLNQIG EALSALEGAF ARGETGWEED FAFHHAVAEA AGNELFPRLL EDLREILSGS
MRMALGLTRQ GSDDRRRRVR EEHRKIYSAI SGQNRDLARL YMRYHLTESR ARITGSHGDL