| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3289 |
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| Symbol | |
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| ID | 5324173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3481318 |
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| End bp | 3482568 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640792241 |
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| Product | sarcosine oxidase beta subunit family protein |
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| Protein accession | YP_001328946 |
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| Protein GI | 150398479 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.96044 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTACT CTGCCCTTTC CATCCTCCTC AATGGCCTGC GCGGCAACCG GAACTGGACG
CCGGCATGGC GCCAGCCAGA CCCGAAGCCA CATTACGACG TGATCATCGT CGGCGGCGGT
GGCCATGGCC TCGCGACTGC CTATTACCTT GCCAAGGAAT TCGGCGTCAC CAATGTCGCG
GTGCTGGAAA AGAATTATGT CGGTTCGGGC AATGTCGGCC GCAACACGAC GATCATTCGC
TCGAACTACC TGCTCCCCGG GAACAATCCA TTTTACGAGC TCTCCATGCA GCTATGGGAG
GGGCTGGAGC AGGATTTTAA TTTCAATGCG ATGGTCTCGC AGCGCGGCGT TCTCAATCTC
TATCATTCGG ACGCTCAGCG CGATGCCTAC ACGCGCCGCG GCAATGCGAT GCGGCTTCAC
GGGGTAGACG CAGAACTCCT CGATCGGGCG GCCGTACGCC GGATGCTGCC CTTTCTCGAT
TTCGACAATG CCCGCTTCCC CATCCAGGGC GGGCTCCTGC AGCGCCGCGG CGGTACCGTG
CGCCACGACG CCGTCGCCTG GGGATATGCC CGCGGCGCCG ACAGCCGCGG GGTCGATATC
ATCCAGAATT GCGAAGTGAC CGGGATCAGG CGAGAAGACG GGCGAGTCAC CGGCGTCGAG
ACCAGCCGCG GCTTCATCGG CTGCGGAAAG CTCGCCCTGG CGGCGGCCGG AAATTCCTCG
AAGGTCGCCG AACTGGCGGG ATTGCGCCTG CCGATCGAGA GTCACGTGCT TCAGGCCTTC
GTGTCGGAGG GGCTGAAACC GTTCATTGAC GGGGTGGTCA CTTTCGGAGC CGGACATTTC
TACGTTTCAC AATCGGACAA GGGCGGCCTC GTCTTTGGCG GCGATCTCGA CGGCTATAAT
TCCTACGCTC AGCGCGGCAA CCTGGCGACC GTCGAGCATG TGGCGGAGGC CGGAAAGGCC
ATGATTCCGG CATTGTCGCG GGTGCGGGTG CTGCGCTCCT GGGGCGGTAT CATGGATATG
AGCATGGACG GCTCGCCGAT CATCGACCGC ACGCCGATCG ACAATCTCTA TCTGAATGCC
GGCTGGTGCT ATGGCGGGTT CAAGGCGACC CCTGCCTCAG GATTCTGCTT CGCACATCTC
CTCGCCCGAG GCGCGCCGCA AAAGACAGCC GCAGCGTTTC GTCTCGACCG TTTCGAGCGA
GGCTACCTCC TTGATGAAAA AGGCCAAGGC GCTCAGCCGA ACCTTCACTG A
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| Protein sequence | MRYSALSILL NGLRGNRNWT PAWRQPDPKP HYDVIIVGGG GHGLATAYYL AKEFGVTNVA
VLEKNYVGSG NVGRNTTIIR SNYLLPGNNP FYELSMQLWE GLEQDFNFNA MVSQRGVLNL
YHSDAQRDAY TRRGNAMRLH GVDAELLDRA AVRRMLPFLD FDNARFPIQG GLLQRRGGTV
RHDAVAWGYA RGADSRGVDI IQNCEVTGIR REDGRVTGVE TSRGFIGCGK LALAAAGNSS
KVAELAGLRL PIESHVLQAF VSEGLKPFID GVVTFGAGHF YVSQSDKGGL VFGGDLDGYN
SYAQRGNLAT VEHVAEAGKA MIPALSRVRV LRSWGGIMDM SMDGSPIIDR TPIDNLYLNA
GWCYGGFKAT PASGFCFAHL LARGAPQKTA AAFRLDRFER GYLLDEKGQG AQPNLH
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