| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3287 |
|---|
| Symbol | |
|---|
| ID | 5324171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3478053 |
|---|
| End bp | 3481016 |
|---|
| Gene Length | 2964 bp |
|---|
| Protein Length | 987 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640792239 |
|---|
| Product | sarcosine oxidase alpha subunit family protein |
|---|
| Protein accession | YP_001328944 |
|---|
| Protein GI | 150398477 |
|---|
| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
|---|
| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCT ATCGCCTTCC GAACCTTGGT CTTGTCAGCC GAGACACACC CGTCTCCTTT
ACCTTCGACG GAAAGCCGAT GCAGGGCCTT CAGGGCGACA CGCTCGCCTC GGCGCTGCTC
GCCAACGGAC GGATGCTCGT CGGCCGCAGC TTCAAATATC ACCGGCCTCG TGGAATTTTG
ACCGCGGGAG CCGCCGAACC GAACGCACTC GTCACCATTG GCCATGGCGG CCGGACCGAG
CCGAATACGC GCGCGACGAT GCAGGAGCTC TACGAGGGTC TCGAGGCACA GAGCCAGAAC
CGCTGGCCCT CGCTCGATTT CGACCTGGGT GCATTGAACG GTATCCTGTC GCCCTTTCTC
GGCGCCGGCT TCTACTACAA GACTTTCATG TGGCCGGCGC CGCTCTGGGA GAAGCTCTAC
GAGCCGATCA TCCGCAAGGC GGCCGGCCTC GGCAAGGCAA GCTACGAGGC AGACCCCGAC
GCCTATGAGA AGAGCTGGGC GCATTGCGAC CTGCTCGTCA TCGGCGCCGG CCCGACGGGA
CTTGCCGCGG CGCTTACCGC CGGCCGCGCC GGTGCCCGGG TCATTCTCCT GGATGAGGGC
TCGCTCCCCG GCGGGTCGCT GCTGTTCGAG ACGGCGATGA TCGACGGCAA AGCGGCCGCT
CAATTCGCCC GTGACACAAG CGATGAATTG CGCTCGATGC CGAATGTCCG GTTCATGATG
CGCACCACCG CCTTCGGTTG GTACGACGGC AATGTTTTCG GGGCCGTCGA ACGGGTACAG
AAACATGTGC GGGAGCCGGT GCCCTCCCTG CCGGTCGAGC GGCTATGGCG CATCGCCACC
AAAAAGGCCC TGCTTGCGAG CGGCGCGGAA GAACGCCCGC TCGTCTTCGG CGGCAACGAT
CGTCCGGGCG TTATGATGGC AAGTGCGATG CGCGCCTACC TCAATCGATA CGGAGTCGCT
CCGGGCCGGG CGACCGCGAT CTTCACCACC AACGACAGCG GCTATACCCT TGCACGCGAT
CTAGAGGCGG CGGGCGTCGA CGTTGCTGCC ATAGTCGACA GCCGCCCGGC CGCAGGCGTG
GACTATCGCG GCAAAGCGCG CCTGATCCGG GAAGCTGTCG TTTGCGGCGT AACGGGCCGC
AAGGCAATCT CTGCGATCGA GGTCCATCGC GGCGATCGGA CGGAGTCGAT CGCGGTCGAT
GCGCTCGCAA TGGCGGGTGG TTTCGACCCG ATCATCCATC TTGCCTGCCA CCGGGGCGGC
AGGCCCGTCT GGTCGGCGGA AAAAACCGCC TTTCTCGCAC CTGGGAGCTT GAACGGCCTC
GAGGTTGCCG GCGGCGCAGC AGCGACTTCG GGGCTCGCGG CCTGCCTCGG AGAAGGCATT
GCCCAAGCTC AGGCTGCCCT CGAGGGCGTC GGCCTGCGGT GCCCGCCGAT GGACCTTCCG
AAGGTCGAGG GAGACGACGC TGCATATTCT TCAAATCCAC TGTGGTCGAT CCCTGGCGTC
AAGGACAAAG CCTTCATCGA TTTCCAGAAC GACGTTCATC TCAAGGATAT CGGGCTGGCC
GTCCGCGAAG GCTATGGACA TGTCGAGCTT GCCAAACGAT ACACCACCAC CGGCATGGCG
ACGGACCAGG GCAAGCTTTC CAACGTGAAT GCAATCGGAC TGATCGCCAA AGCACGCGGC
GTCTCGCCTG CCGAGGTCGG GACGACGACG TTCCGCCCTT TCTATACGCC GGTGTCCTTC
GGTGCGCTGA CCGGCGCACA TGCGGGACAT CATTTCCAGC CGGTCCGCAA GTCCCCCCTC
CATGACTGGG CGAAAAAGCA CGGCGCCGTC TTCGTCGAGA CGGGTCTCTG GTATCGCTCC
GCCTGGTTTC CGAAAAGCGG TGAACGGAGC TGGCGGGAGA GCGTCGAGCG AGAAGTGCTG
AACGTTCGCA AGAATGCCGG ACTTTGCGAC GTCTCGATGC TCGGCAAGAT CGAGTTATCC
GGAAGCGACG CCGCCGAATT CCTCAACCGC GTATATTGCA ACGCCTTCCT CAAACTGCCG
GTCGGAAAGG CCCGCTACGG GCTCATGCTG CGCGAAGACG GCTTCATTTA CGACGACGGC
ACGACGAGTC GCCTCGCCGA GAATCGCTTT TTCATGACGA CGACCACCGC CTATGCGGCC
GGCGTCATGA ACCATCTCGA GTTCTGCGCG CAGGTCCTCT GGCCCGAACT CGACGTCCGC
CTCGCCTCCG TCACCGACCA ATGGGCGCAG ATGGCTGTTG CCGGACCAAA GGCGCGCATG
ATCCTGCAGA AGATCGTCGA CGACGACATA TCCGACGCAG CCTTCCCGTT TCTCGCAGCG
AAGGAGGTCT CCCTGTTCGG CGGCGCCCTT CACGGCTGCC TGTTTCGAAT TTCATTCTCC
GGTGAGCTCG CCTACGAGAT AGCGGTGCCG GCCGGCTACG GCGAAAGCGT TGCCGACGCG
CTCCTGGACG CGGGGAAGGA CCACGGTATC ATGCCCTATG GCGTCGAGAC GCTTAGCGTC
CTGCGCATCG AAAAGGGCCA TGTGACGCAC AACGAGATCA ACGGCACGGT CGTTCCGGCC
GATCTGGGCT TCGGTAAAAT GGTGTCGGCC ACCAAGCTGG ATTTCATCGG CAAGGCGATG
CTCCAGCGCG AGGGGCTGGC CGCGTCCGGC AGGCCGCAAC TCGTGGGCGT CGTGCCGATC
GATCCGAAGC ACTCTTTCCG CAGCGGTTCG CATATTCTCG CCAAGGGAGC GGAAGCCACG
CTCGAGAACG ACGAGGGCTA TGTAACGTCG AGCGCCTACT CCCCGCATGT CGGATCGACC
ATTGCTCTGG CACTCGTCCA CAACGGGCAG AGCCGCCACG GCGAAGAGGT GCTGGTATGG
AGTGGCCTTC ACGGAGAATC CACGCCTGCG CGTCTGTGCC ACCCGGTTTT CTTCGACCCT
CAGAACGAGA GGCTCCATGT CTGA
|
|---|
| Protein sequence | MSSYRLPNLG LVSRDTPVSF TFDGKPMQGL QGDTLASALL ANGRMLVGRS FKYHRPRGIL
TAGAAEPNAL VTIGHGGRTE PNTRATMQEL YEGLEAQSQN RWPSLDFDLG ALNGILSPFL
GAGFYYKTFM WPAPLWEKLY EPIIRKAAGL GKASYEADPD AYEKSWAHCD LLVIGAGPTG
LAAALTAGRA GARVILLDEG SLPGGSLLFE TAMIDGKAAA QFARDTSDEL RSMPNVRFMM
RTTAFGWYDG NVFGAVERVQ KHVREPVPSL PVERLWRIAT KKALLASGAE ERPLVFGGND
RPGVMMASAM RAYLNRYGVA PGRATAIFTT NDSGYTLARD LEAAGVDVAA IVDSRPAAGV
DYRGKARLIR EAVVCGVTGR KAISAIEVHR GDRTESIAVD ALAMAGGFDP IIHLACHRGG
RPVWSAEKTA FLAPGSLNGL EVAGGAAATS GLAACLGEGI AQAQAALEGV GLRCPPMDLP
KVEGDDAAYS SNPLWSIPGV KDKAFIDFQN DVHLKDIGLA VREGYGHVEL AKRYTTTGMA
TDQGKLSNVN AIGLIAKARG VSPAEVGTTT FRPFYTPVSF GALTGAHAGH HFQPVRKSPL
HDWAKKHGAV FVETGLWYRS AWFPKSGERS WRESVEREVL NVRKNAGLCD VSMLGKIELS
GSDAAEFLNR VYCNAFLKLP VGKARYGLML REDGFIYDDG TTSRLAENRF FMTTTTAYAA
GVMNHLEFCA QVLWPELDVR LASVTDQWAQ MAVAGPKARM ILQKIVDDDI SDAAFPFLAA
KEVSLFGGAL HGCLFRISFS GELAYEIAVP AGYGESVADA LLDAGKDHGI MPYGVETLSV
LRIEKGHVTH NEINGTVVPA DLGFGKMVSA TKLDFIGKAM LQREGLAASG RPQLVGVVPI
DPKHSFRSGS HILAKGAEAT LENDEGYVTS SAYSPHVGST IALALVHNGQ SRHGEEVLVW
SGLHGESTPA RLCHPVFFDP QNERLHV
|
|---|
| |