| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3266 |
|---|
| Symbol | hslU |
|---|
| ID | 5324145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3444191 |
|---|
| End bp | 3445498 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640792214 |
|---|
| Product | ATP-dependent protease ATP-binding subunit HslU |
|---|
| Protein accession | YP_001328925 |
|---|
| Protein GI | 150398458 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00390] ATP-dependent protease HslVU, ATPase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTT TTTCACCCAG GGAAATCGTA TCGGAACTCG ACCGCTACAT TATCGGCCAG
AAGGACGCGA AGCGCGCCGT TGCCATTGCG CTGCGCAACC GATGGCGCCG CCAGCAGCTC
AGCGACGAAC TGCGCGACGA GGTCATGCCC AAGAATATCT TGATGATCGG CCCGACCGGC
GTCGGCAAAA CGGAAATTTC CCGCCGCCTC GCCAAGCTCG CCGGCGCGCC TTTCGTCAAG
GTGGAGGCCA CGAAGTTCAC GGAAGTCGGC TATGTCGGCC GCGATGTCGA ACAGATCGTG
CGCGATCTCG TCGAGGTCGG CATCAGCCTC GTGCGCGAGA AGCGGCGCGC CGAAGTCAAG
GCGAAAGCTC ATCAGAATGC CGAGGAGCGG GTTCTCGATG CTCTGGTCGG CACCACCGCC
TCGCCGGCGA CCCGCGACTC CTTCCGCAAG AAACTGCGCG CCAACGAGCT CGACGACAAG
GAGATCGAGG TCGATGTCGC GGAAACCGGC AACCCCGGCG GCGCCTTCGA GATTCCGGGG
ATGCCGGGCG CCAATATCGG CGTCCTGAAC CTCTCGGAAA TGTTCGGCAA GGCGCTGGGT
GGCAGGACCA GGAAGATCAA GACCACGGTC AAGGACTCCT ATGCGCTGCT GGTCAACGAC
GAGTCGGACA AGCTGCTCGA CAACGAGCAG ATCCAGCGTG AGGCGGTGGC GTCGGCGGAA
AATGACGGCA TCGTTTTCCT GGACGAGATC GACAAGATCG CGACCCGTGA AGGCGGTATC
GGCGCCGGCG TTTCACGCGA GGGGGTGCAG CGCGACCTCC TGCCACTGGT CGAGGGCACG
ACGGTGGCCA CGAAATACGG ACCTGTGAAG ACCGATCACA TCCTGTTTAT CGCTTCAGGT
GCCTTCCACG TCGCCAAACC CTCGGATCTG CTGCCGGAGC TGCAGGGTCG TCTGCCGATC
CGCGTGGAGC TTCGCGCGCT CACGAAGGAG GATTTCCGCC GAATCCTGAC GGAGACGGAA
GCGAGTCTCA TCCGTCAGTA CAAGGCGCTG CTCGAAACCG AGGGAGTGAC CCTCGATTTC
ACCGAGGACG CGATCGATGC GCTCGCGGAA GTCGCGGTCC AGCTTAACTC CAATGTCGAG
AATATCGGCG CACGCCGCCT GCAGACGGTG ATGGAGCGCG TGCTCGACGA CGTCTCCTTC
AATGCTCCCG ATCGCGGCGG CCAGGGGGTC ACGATCGATG CCGATTACGT CCGCGTGCAT
GTCGGCGATC TGGCGGCAAA TACCGACCTG TCGCGCTACA TCCTCTGA
|
|---|
| Protein sequence | MSSFSPREIV SELDRYIIGQ KDAKRAVAIA LRNRWRRQQL SDELRDEVMP KNILMIGPTG
VGKTEISRRL AKLAGAPFVK VEATKFTEVG YVGRDVEQIV RDLVEVGISL VREKRRAEVK
AKAHQNAEER VLDALVGTTA SPATRDSFRK KLRANELDDK EIEVDVAETG NPGGAFEIPG
MPGANIGVLN LSEMFGKALG GRTRKIKTTV KDSYALLVND ESDKLLDNEQ IQREAVASAE
NDGIVFLDEI DKIATREGGI GAGVSREGVQ RDLLPLVEGT TVATKYGPVK TDHILFIASG
AFHVAKPSDL LPELQGRLPI RVELRALTKE DFRRILTETE ASLIRQYKAL LETEGVTLDF
TEDAIDALAE VAVQLNSNVE NIGARRLQTV MERVLDDVSF NAPDRGGQGV TIDADYVRVH
VGDLAANTDL SRYIL
|
|---|
| |