Gene Smed_3219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3219 
Symbol 
ID5324098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3392624 
End bp3393001 
Gene Length378 bp 
Protein Length125 aa 
Translation table11 
GC content62% 
IMG OID640792167 
ProductXRE family transcriptional regulator 
Protein accessionYP_001328878 
Protein GI150398411 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCAT TCGGTGAGGC CGTACGGGAG CTCCGGCGGC GCAAGGGCGT GACGCAGAAG 
GAGATGGCGG CGGCCATCGG GGTTTCGCCG GCCTACCTCT CGGCTCTCGA ACATGGCAAG
CGGGGCGCGC CGAGCTTCGA TTTCCTCCAG CGCGTTGCCG GCTATTTCAA CGTGATCTGG
GACGAGGCCG ACGAACTTTT CCGGATCGCG CATATTTCAG ACCCGAAAGT GGTGCTCGAC
ACCTCCGGTC TGCCGCCCGG TCATACCGCC TTCGCCAATC GTTTGAGCGG GCAGATTCGC
AGCCTCTCGG CGGAGACGAT CCGGGCACTG GAAGATGTTT TGGAAAAAGC CACATTTCCT
GATAAGGACA GGGGATGA
 
Protein sequence
MTPFGEAVRE LRRRKGVTQK EMAAAIGVSP AYLSALEHGK RGAPSFDFLQ RVAGYFNVIW 
DEADELFRIA HISDPKVVLD TSGLPPGHTA FANRLSGQIR SLSAETIRAL EDVLEKATFP
DKDRG