Gene Smed_3213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3213 
Symbol 
ID5324092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3388060 
End bp3388788 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content60% 
IMG OID640792161 
ProductDNA polymerase III subunit epsilon 
Protein accessionYP_001328872 
Protein GI150398405 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGAAA TCATCTTCGA TACGGAAACG ACCGGTCTCG ACAACCGCGA GGACCGGGTC 
ATCGAGATCG GCGGAATCGA GCTCGAGAAT CAGTTTCCGA CGGGGCGCAC GATCCATATC
TATATCAATC CGGGCGATCG CAAGGTTCAT CCGGAAGCGC TCGCCGTCCA CGGCATTACG
GATGATTTCC TGAAGGACAA GCCGTCCTTC GCCGAGATAG CACAGGAAAT CGTCGATTTC
TTCGGCGATG CCCGCTGGGT CGCCCACAAC GCGACCTTCG ATATGGGCTT CATCAATGCG
GAGTTTGAGC GGCTCGGTCT GCCGCCGGTT GGCAGCGACA GGGTGATCGA CACGCTATCC
CTTGCCCGGC GCAAGCACCC GATGGGGCCG AATTCGCTCG ATGCGCTCTG CCGCCGCTAC
GGTATCGACA ACTCCCATCG AACCAGGCAC GGGGCGCTGC TCGACTCCGA ACTCCTCGCC
GAAGTCTATA TTGAGATGAT CGGGGGGCGC CAGGCGGCGC TGGGTCTCGT GATGACGGAG
ACGGGTGGAC GGTCGCTCGA AGCCGACGAC GGGCCGGTTA TCATCGTCGG GAGGGAGCGG
CCTTTGCGGC CACGGCTGAC GGAGGCCGAA ATCGCTGCTC ATGCGGCGCT CGTCTCGAAG
ATCGGCGCAA ATGCAATATG GGCAAAATTC AGCGAAGCTG AAGATATCCT GAGATCGGAA
GCCGTTTAG
 
Protein sequence
MREIIFDTET TGLDNREDRV IEIGGIELEN QFPTGRTIHI YINPGDRKVH PEALAVHGIT 
DDFLKDKPSF AEIAQEIVDF FGDARWVAHN ATFDMGFINA EFERLGLPPV GSDRVIDTLS
LARRKHPMGP NSLDALCRRY GIDNSHRTRH GALLDSELLA EVYIEMIGGR QAALGLVMTE
TGGRSLEADD GPVIIVGRER PLRPRLTEAE IAAHAALVSK IGANAIWAKF SEAEDILRSE
AV