| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3189 |
|---|
| Symbol | purH |
|---|
| ID | 5324068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3358668 |
|---|
| End bp | 3360278 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640792137 |
|---|
| Product | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
|---|
| Protein accession | YP_001328848 |
|---|
| Protein GI | 150398381 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0138] AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) |
|---|
| TIGRFAM ID | [TIGR00355] phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTCG CCTCCAAGAA AATTCCCGCC CCGGACGAAG TCCGGATCAA AACCGCCCTC
CTTTCGGTCT CCGACAAATC GGGCATCGTC GAACTCGCCC GCCACCTCAA TGACAGGGGC
GTGCGGCTGG TATCGACCGG CGGGACGCAC AAGGCGCTTG CCGATGCGGG CCTTCCCGTC
AGCGACGTTT CGGAGCTGAC GGGGTTTCCG GAGATCATGG ACGGTCGCGT GAAAACCCTT
CATCCCGGCG TTCACGGCGG TCTGCTGGCT ATTCGCGACG ATGCGGAGCA TGCCGGCGCG
ATGAGCGCAC ACGGTATTAC AGCGATCGAT CTCGCCGTCA TCAATCTCTA CCCCTTCGAG
GAGGTTCGCG CCAAGGGCGG CGACTATCCG ACCACGGTCG AGAATATCGA CATTGGCGGT
CCCGCAATGA TCCGGGCGTC GGCCAAGAAC CACGCCTATG TGACCGTTGT GACCGACCCG
GCGGATTATC CGCTGCTGCT GGAGGAGATC GCGGGCGGCA CGACGCGCTA TGCCTTCCGC
CAGAAAATGG CCGCCAAGGC CTATGCCCGC ACAGCGGCCT ATGATGCGGC AATCTCCAAC
TGGTTCGCCG AGGTACTCGA CACGCCCATG CCGCGCCACC GCGTCATCGG CGGGGTGCTC
AAGGAAGAGA TGCGCTACGG CGAAAACCCG CATCAGAAGG CCGGTTTCTA TGTGACCGGT
GACAAGCGGC CGGGGGTCGC CACTGCAGCG CTTCTCCAAG GCAAGCAGCT CTCCTACAAC
AACATCAACG ACACCGACGC CGCCTTCGAG CTGGTGGCGG AATTCCTGCC GGAAAAGGCG
CCTGCCTGCG CCATTATCAA GCATGCCAAC CCCTGCGGCG TTGCGACCGC GCCATCGCTC
GCGGAAGCAT ATCGCCGGGC GCTTGCCTGT GATTCGACCT CCGCTTTCGG CGGCATTATC
GCGCTTAATC AGGAACTCGA CGCGGCGACC GCCGAAGAGA TCGTGAAGCT CTTCACCGAA
GTGATCATCG CCCCGTCGGT CAGCGACGAG GCGAAAGCGA TCATCGCCCG GAAGCCCAAT
CTGCGGCTGC TTGCGACCGG CGGCCTGCCG GATCCGCGCA CGCCCGGTCT GACGGCAAAG
ACGGTGGCCG GGGGCCTTCT TGTCCAGACG CGCGACGACG GCATGATCGA AGACATCGAA
CTGAAGGTGG TCACGAAGCG CACGCCGACG GCGCAGGAGC TCGAAGACAT GAAATTTGCC
TTCAAGGTGG CCAAGCACGT CAAGTCGAAT GCCGTCGTCT ACGCGAAAGG CGGTCAGACG
GCGGGTATCG GCGCCGGACA GATGAGCCGG GTCGATTCCG CGAGAATTGC TGCCATCAAG
GCGGAAGAGG CGGCGAAGGC GCTCGGTCTC GCCGAGCCTC TGACACGCGG CTCCGCGGTT
GCCTCGGAAG CCTTCCTGCC GTTCGCTGAC GGCCTTCTGT CCGCGATCGC TGCGGGGGCC
ACCGCAGTGA TCCAGCCGGG CGGCTCCATG CGCGACGAGG AGGTGATCGC AGCGGCCGAC
GAGCACAATG TCGCGATGGT CTTCACCGGG ATGCGGCATT TCCGGCACTG A
|
|---|
| Protein sequence | MAVASKKIPA PDEVRIKTAL LSVSDKSGIV ELARHLNDRG VRLVSTGGTH KALADAGLPV
SDVSELTGFP EIMDGRVKTL HPGVHGGLLA IRDDAEHAGA MSAHGITAID LAVINLYPFE
EVRAKGGDYP TTVENIDIGG PAMIRASAKN HAYVTVVTDP ADYPLLLEEI AGGTTRYAFR
QKMAAKAYAR TAAYDAAISN WFAEVLDTPM PRHRVIGGVL KEEMRYGENP HQKAGFYVTG
DKRPGVATAA LLQGKQLSYN NINDTDAAFE LVAEFLPEKA PACAIIKHAN PCGVATAPSL
AEAYRRALAC DSTSAFGGII ALNQELDAAT AEEIVKLFTE VIIAPSVSDE AKAIIARKPN
LRLLATGGLP DPRTPGLTAK TVAGGLLVQT RDDGMIEDIE LKVVTKRTPT AQELEDMKFA
FKVAKHVKSN AVVYAKGGQT AGIGAGQMSR VDSARIAAIK AEEAAKALGL AEPLTRGSAV
ASEAFLPFAD GLLSAIAAGA TAVIQPGGSM RDEEVIAAAD EHNVAMVFTG MRHFRH
|
|---|
| |