| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3164 |
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| Symbol | |
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| ID | 5324043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3324751 |
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| End bp | 3326406 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640792112 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001328823 |
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| Protein GI | 150398356 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.637341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTATG ACTATATCAT TACCGGCGGA GGTCCTGCGG GCTGCGTTCT CGCAAACCGC
CTGAGCGAGG ACCCGGCCGT CAAGGTGCTG CTTCTCGAGG CAGGCGGTGG CGATTGGAAC
CCGCTTTTCC ACATGCCGGC CGGTTTCGCC AAGATGACGA AGGGAGTCGC AAGCTGGGGC
TGGCACACAG TGCCGCAGAA GCACATGAAG GGCAGGGTGC TGCGCTATAC GCAGGCCAAG
GTGATCGGCG GCGGTTCCTC GATCAATGCG CAGCTTTATA CGCGCGGCAA CGCGGCGGAT
TACGACCTCT GGGCTGGCGA GGATGGCTGC ACCGGCTGGG ATTATCGCAG CGTGCTGCCC
TATTTCAAGC GCGCGGAAGA CAACCAGCGT TTCGCCGACG ATTATCACGC CTATGGCGGG
CCGCTCGGCG TCTCCATGCC GGTTTCGACG CTGCCGATCT GCGACGCCTA TATCCGCGCG
GGGCAGGAGC TCGGCATTCC CTACAATCAC GATTTCAACG GCAAGCAGCA GGCGGGTGTC
GGCTTTTATC AACTGACCCA GCGTGATCGC CGCCGTTCCT CCGCTTCGCT GGCCTACCTT
TCTCCGGTCA GGGACCGGAA AAACCTCATT GTGCGCACCG GCGCTCGCGT AGCCCGCATC
GTCCTCGAAG GAAAACGCGC GGTCGGTGTA GAGGTGGTAA CGGGGAAAGG CAGCGAAATC
ATCCGTGCGA ACCGGGAAGT GCTGGTCACC TCCGGCGCGA TCGGCTCGCC CAAGCTGCTC
CTTCAGTCCG GCATCGGCCC GGCCGATCAT CTGCGCTCCG TCGGCGTCGA GGTGCGGCAC
GATCTCCCCG GCGTTGGCGG GAACCTCCAG GATCACCTCG ATCTCTTCGT CATTGCCGAA
TGCACCGGCG ATCACACCTA TGACGGCGTC GCCCGGCTGC ACCGCACTTT CTGGGCCGGC
CTGCAATATG TGCTCTTCCG CTCCGGCCCG GTGGCCTCGT CGCTCTTCGA GACCGGCGGC
TTCTGGTATG CCGATCCGAA TGCCCGCTCG CCGGACATCC AGTTTCATCT CGGTCTCGGT
TCGGGCATCG AGGCCGGCGT CGCCCGGCTC AAGAACGCCG GCGTCACGCT CAACTCCGCC
TATCTGCATC CGCGTTCGCG CGGCACCGTG CGGCTCTCCT CCGCCGATCC GGCGGCCGCA
CCGCTGATCG ACCCGAACTA TTGGGAGGAC CCGCACGATC GCAAAATGTC GCTGGAAGGC
CTGAAAATCG CGCGCGAGAT CATGCAGCAG GCGGCATTGA AGCCCTTTGT CTTGGCTGAA
CGCTTGCCGG GAGACGAAAT CCGGACCGAG GAACAGCTCT TCGACTATGG CTGTGCCAAT
GCCAAGACCG ACCACCACCC TGTCGGGACC TGCAGGATGG GCACCGATGC TTCGGCGGTC
GTCGATCTGG AGCTCAAAGT TCGCGGCATC GACGGACTGC GTGTCTGCGA CAGTTCGGTC
ATGCCGCGGG TACCTTCCTG CAATACCAAT GGCCCGACGA TTATGATGGG CGAGAAGGGG
GCCGACATTA TCCGCAGCCT GCCGCCGCTG CCGCCTGCCG TCTTCCAGCA CGAGCGCAAC
GATATGCGGC CGCGGGCGCG GACGGAGGTT CGGTGA
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| Protein sequence | MSYDYIITGG GPAGCVLANR LSEDPAVKVL LLEAGGGDWN PLFHMPAGFA KMTKGVASWG
WHTVPQKHMK GRVLRYTQAK VIGGGSSINA QLYTRGNAAD YDLWAGEDGC TGWDYRSVLP
YFKRAEDNQR FADDYHAYGG PLGVSMPVST LPICDAYIRA GQELGIPYNH DFNGKQQAGV
GFYQLTQRDR RRSSASLAYL SPVRDRKNLI VRTGARVARI VLEGKRAVGV EVVTGKGSEI
IRANREVLVT SGAIGSPKLL LQSGIGPADH LRSVGVEVRH DLPGVGGNLQ DHLDLFVIAE
CTGDHTYDGV ARLHRTFWAG LQYVLFRSGP VASSLFETGG FWYADPNARS PDIQFHLGLG
SGIEAGVARL KNAGVTLNSA YLHPRSRGTV RLSSADPAAA PLIDPNYWED PHDRKMSLEG
LKIAREIMQQ AALKPFVLAE RLPGDEIRTE EQLFDYGCAN AKTDHHPVGT CRMGTDASAV
VDLELKVRGI DGLRVCDSSV MPRVPSCNTN GPTIMMGEKG ADIIRSLPPL PPAVFQHERN
DMRPRARTEV R
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