Gene Smed_3116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3116 
Symbol 
ID5323995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3265713 
End bp3266438 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content60% 
IMG OID640792066 
Productacetoacetyl-CoA reductase 
Protein accessionYP_001328777 
Protein GI150398310 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01829] acetoacetyl-CoA reductase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.937548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGGG TAGCATTGGT CACGGGCGGA TCGCGCGGCA TCGGCGCGGC AATCGCCATC 
GCGCTGAAGG CAGCGGGCTA CAAGGTGGCT GCGAATTACG CGGGCAATGA CGAAAAAGCC
CAGGCTTTCA AACAGGAGAC CGGCATCCCC GTTTATAAGT GGGATGTCTC GAGTTACGAG
GCCTGCGTCG ACGGCATTGC CAGGGTCGAG GCGGACCTGG GGCCGGTAGA TATCCTCGTC
AACAATGCCG GCATCACACG TGACGCGATG TTCCACAAGA TGACGCCGCA ACAATGGGGC
GAAGTCATAG GCACGAATCT CACCGGCGTT TTCAACATGA CGCATCCGAT CTGGTCGGGG
ATGCGCGACC GCGGGTTCGG CCGCATCGTC AACATCTCGT CGATCAACGG TCAGAAGGGG
CAGATGGGAC AGGCGAACTA TTCTGCCGCC AAGGCCGGCG ATCTCGGCTT CACCAAGGCG
CTTGCTCAGG AAGGGGCAGC GAAGGGAATC ACGGTAAATG CCATTTGCCC GGGTTATATC
GGCACGGAAA TGGTGCTCGC CGTACCGGAG AAGGTGCTTA ACGAGCGGAT CATCCCGCAG
ATACCCGTCG GCCGCCTGGG CGAACCGGAA GAAGTCGCGC GATGCGTCGT GTTCCTCGTG
TCGGATGATG CCGGCTTCAT TACCGGTTCC ACGATCTCGG CCAATGGTGG CCAGTACTTC
GCCTGA
 
Protein sequence
MSRVALVTGG SRGIGAAIAI ALKAAGYKVA ANYAGNDEKA QAFKQETGIP VYKWDVSSYE 
ACVDGIARVE ADLGPVDILV NNAGITRDAM FHKMTPQQWG EVIGTNLTGV FNMTHPIWSG
MRDRGFGRIV NISSINGQKG QMGQANYSAA KAGDLGFTKA LAQEGAAKGI TVNAICPGYI
GTEMVLAVPE KVLNERIIPQ IPVGRLGEPE EVARCVVFLV SDDAGFITGS TISANGGQYF
A