| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3111 |
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| Symbol | rpoH2 |
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| ID | 5323990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3258437 |
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| End bp | 3259303 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640792061 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_001328772 |
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| Protein GI | 150398305 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.58748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGACCC TCACAGCAGA CAGGCGTATG ATCAAGATTG CCATGGAAGC GCCCTATCTC
GAGCGGGACG AGGAACATGC GCTCGCGGAG GCATGGCGCA ACGACAACGA CCAGGAGGCG
CGCAACAAGA TCGCGATGTC GCATATGCGG CTGGTCATCT CGATGGCGGC GAAGTTCCGT
AGCTTTGGGC TGCCCATGGG AGATCTCGTG CAGGAGGGGC ACATCGGTCT ATTGGAAGCC
GCAGCGCGCT TCGAACCGAG CCGTGAGGTG CGTTTTTCGA CCTATGCGAC CTGGTGGATC
CGAGCCTCGA TGCAGGACTA TGTGCTGCGC AACTGGTCGA TCGTGCGCGG GGGAACCAGT
TCGGCGCAGA AGGCGCTTTT CTTCAACCTG CGCCGGCTGC GGGCCCGGCT CGCACAGGGC
GACAGGCAGT TGACCTCGCA GGCGGTGCAT GAGGAGATCG CCGCCGCAAT CGGCGTGAGT
CTCGCCGACG TACAAACGAT GGATGCACGC CTCTCTGGAA ACGACGCGTC GCTGCAGGCC
CCCATAGGCG GCGGCGACCC GGATGCGGGG GCCCGGCTCG ATTTTCTGGC GAGCGAGGCG
CCTCTGCCCG ATGAGCAGGT GAGCGACCTG ATCGACGGGG AGCGCGCCCG ACGGTGGCTG
CACGTCGCTC TCGGGGAGCT TAGCGAACGC GAAATGAAGA TCATCCGCGC ACGGCGTCTC
TCCGAGGACG GTGCAACATT GGAGGAACTC GGTGTTGCGC TTGGAATATC GAAGGAGCGC
GTGCGGCAAA TTGAAACACG TGCACTTGAA AAGCTGCGCG CGGCACTCAC CGCCAGGGCC
CCGGCCCTGA CGGCGGCCCT GCATTAA
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| Protein sequence | MKTLTADRRM IKIAMEAPYL ERDEEHALAE AWRNDNDQEA RNKIAMSHMR LVISMAAKFR
SFGLPMGDLV QEGHIGLLEA AARFEPSREV RFSTYATWWI RASMQDYVLR NWSIVRGGTS
SAQKALFFNL RRLRARLAQG DRQLTSQAVH EEIAAAIGVS LADVQTMDAR LSGNDASLQA
PIGGGDPDAG ARLDFLASEA PLPDEQVSDL IDGERARRWL HVALGELSER EMKIIRARRL
SEDGATLEEL GVALGISKER VRQIETRALE KLRAALTARA PALTAALH
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