| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3107 |
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| Symbol | tbpA |
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| ID | 5323986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3252828 |
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| End bp | 3253856 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640792057 |
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| Product | thiamine transporter substrate binding subunit |
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| Protein accession | YP_001328768 |
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| Protein GI | 150398301 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATTT CACTCCACGG CAGAACACTT GCCGGGTTCA TGATTGCAGC GGCCACCGTC
ACGGGCGTTT CCGCAAGTGC TTTCGCCGCG GAAAAGACGC TGACGGTCTA CACTTACGAA
AGCTTCATCA CAGAATGGGG GCCGGGCGCG AAGGTCTCCG AAGCCTTCGA GAAGGTCTGC
GACTGCAAGG TCGATTATGT GGGCGTCGCC GACGGGGTCG AACTGCTGAC GCGGCTGAAG
CTCGAAGGTG AGGGATCCAA AGCCGACGTC GTGCTCGGTC TCGACACCAA TCTCGTTGCC
GAGGCCAAGG CGACCGGCTT CTTCGTTCCG CACGGCGTCG ATACCACTTC CGTCGATGTT
CCTGGTGGTT TCACCGACGA CACCTTCATC CCCTATGACT ACGGCCATTT CGCCGTGGTG
TACGATACCG AGATGCTGAA GAGCCCGCCG AAGAGCCTCA GGGATCTGGT GGAAGGCGAT
CCAACGCAGA AGATCGTGAT CGAGGACCCG CGCACTTCCA CCCCCGGCCT CGGCCTGCTG
CTTTGGGTGA AATCGGTCTA TGGCGATCGG GCCGGCGAGG CCTGGGCAAA GCTCAAGGCG
CGTGTGCTGA CGGTCACGCC GGGCTGGTCG GAGGCCTATG GCCTCTTCAC CAAGGGTGAG
GCGCCGATGG TTCTGTCCTA CACCACCTCG CCCGCATATC ACATGGTCGC GGAAGATACC
GAGCGCTATC AGGCGGCCCC GTTCACCGAG GGCCACTACA TCCAGATCGA AGTCGCCGCA
TTGACGAAGA ACGCGAAGGA CCCGGAGCTC GCCCGGAAGT TTCTGGACTT CATGATCGGT
CCGGAATTCC AGTCGATCAT CCCGACGACC AATTGGATGA TGCCGGTGAC GGCCACAAAG
GAACCGCTGC CGGAGGCCTT CGGAAAGCTC GTCGAACCCC GGAAGACCTT TCTCATCCCC
TCCGAGGAGG TTGCGGCCAA CCGCAGGGCC TGGATCGATG AGTGGCTGAC GGCGATGAGC
AGGAACTGA
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| Protein sequence | MSISLHGRTL AGFMIAAATV TGVSASAFAA EKTLTVYTYE SFITEWGPGA KVSEAFEKVC
DCKVDYVGVA DGVELLTRLK LEGEGSKADV VLGLDTNLVA EAKATGFFVP HGVDTTSVDV
PGGFTDDTFI PYDYGHFAVV YDTEMLKSPP KSLRDLVEGD PTQKIVIEDP RTSTPGLGLL
LWVKSVYGDR AGEAWAKLKA RVLTVTPGWS EAYGLFTKGE APMVLSYTTS PAYHMVAEDT
ERYQAAPFTE GHYIQIEVAA LTKNAKDPEL ARKFLDFMIG PEFQSIIPTT NWMMPVTATK
EPLPEAFGKL VEPRKTFLIP SEEVAANRRA WIDEWLTAMS RN
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