Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3102 |
Symbol | |
ID | 5323981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3247507 |
End bp | 3248316 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640792052 |
Product | extracellular solute-binding protein |
Protein accession | YP_001328763 |
Protein GI | 150398296 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAATAC GTCGCCACGT GCTTGCGGGC ATTGCCGCAG TTCTTGCCGC TCCACTCGCA GTCTCCGCGC CCGCTTTCGC AAGCGACCTG CCCGACCTCG GCGGCAAGAC GGTCGTCGTG GTGACCGAGA ACGCCTACCC CCCGCTGCAG TTCGTGGATC CCAAATCCGG CCAGGCCATC GGCTGGGAAT ATGACGCGAT GAACGAGATC GCCAAGCGGC TGAACTTCAA GGTCGAATAT CAGAACACCA GCTGGGATGC GATGATCCAG GCCGTTTCCG ACGGTCAGTA CCAGATCGGA ATGACCGGGA TCACCATCAA GGACGACCGC AAGGAAAAGG TCGATTTTTC CGATCCCTAC CTGCGATCGG AGCAGTTCAT GCTGGTGCGG GGCGACGAGA CCCGCTTTAG CGATGCGAAG AGTTTCGCGG CGCTTGAAAG CGGGTTGATC GGCGCTCAGC CCGGTACCTC GCCGTTCTAC ACGGCAGTTT ACGAAATTCT CGATGGCAAC GAGCAGAACC CGCGGATCAA GCTGTTCGAG ACCTTCGGTG CGACGGTGCA GGCCCTGAAG GCCGGCGACG TCGATCTGGT CCTGACCGAC AGCGTTGCGG CCAAGGGCTA TGTCGATTCC TCCGAAGGCC AGCTCAAGGT GGTCGGCGGG CCGCTCGGCA CCGAGGATTT CGGCTTCATC TTCCCGAAGG GATCGGAGCT TGTGGCGCCG GTCAATGCCG CCATCAAGGC GCTCAAGGAC GACGGCACCT TGGACGCGCT CAACAAGAAG TGGTTTCTCG ATTACAAAAT GGGCGGCTGA
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Protein sequence | MTIRRHVLAG IAAVLAAPLA VSAPAFASDL PDLGGKTVVV VTENAYPPLQ FVDPKSGQAI GWEYDAMNEI AKRLNFKVEY QNTSWDAMIQ AVSDGQYQIG MTGITIKDDR KEKVDFSDPY LRSEQFMLVR GDETRFSDAK SFAALESGLI GAQPGTSPFY TAVYEILDGN EQNPRIKLFE TFGATVQALK AGDVDLVLTD SVAAKGYVDS SEGQLKVVGG PLGTEDFGFI FPKGSELVAP VNAAIKALKD DGTLDALNKK WFLDYKMGG
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