Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3098 |
Symbol | rimM |
ID | 5323977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3244455 |
End bp | 3245075 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640792048 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_001328759 |
Protein GI | 150398292 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.700744 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.9458 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCTTTT CCCGGTGGAT TTCAGGAGCA TGGGCAAGTT CACTCTGGAT GCCGACAATG ACACAGCTGA AAAATCCTGT CCTGATGGCG ACGATCGGTG CGGCGCAGGG GCTGCGCGGC GAGGTGAGGG TGAAGTCTTT CACGGACGAT CCGACGGCAC TTGGGGATTA TGGAAATCTC CACAGCGAGG ACGGCCGCGT CTTCGAGGTG CTCGAAATTC GCGAGGCGAA GAATGTGGTC GTCGTGCGGT TTCGCGGTGT CAACGACCGA ACGGCTGCCG AGGCGCTCAA CGGGCTCGAG CTCTTCATCG AGCGCGACAA TCTTCCCGAT GACGATCTGG ACGAGGACGA GTTCTTCTAT GCCGATCTCG AGGGCATGGA GGCGGTCGAC CGCACCGGCA AGAGCTATGG TTCGGTGACC GGTGTCTTTG ACTTCGGTGC TGGCGATCTT CTCGAACTCA AGGGCCCGGG CCTGCGGCCG GTGCTGATTC CATTCACCGA ATGGTCGGTG CTCGAAATCG ACCTCGAAGC GGGCAAACTC GTCATCGACC CGACTGCAGC AGGGCTGGTC GATGATGAGA AGAGTGGCCC AGGCAAGCCG TTTCCGACCA AGCGCAAGTG A
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Protein sequence | MLFSRWISGA WASSLWMPTM TQLKNPVLMA TIGAAQGLRG EVRVKSFTDD PTALGDYGNL HSEDGRVFEV LEIREAKNVV VVRFRGVNDR TAAEALNGLE LFIERDNLPD DDLDEDEFFY ADLEGMEAVD RTGKSYGSVT GVFDFGAGDL LELKGPGLRP VLIPFTEWSV LEIDLEAGKL VIDPTAAGLV DDEKSGPGKP FPTKRK
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