Gene Smed_3098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3098 
SymbolrimM 
ID5323977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3244455 
End bp3245075 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content60% 
IMG OID640792048 
Product16S rRNA-processing protein RimM 
Protein accessionYP_001328759 
Protein GI150398292 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.700744 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.9458 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTTTT CCCGGTGGAT TTCAGGAGCA TGGGCAAGTT CACTCTGGAT GCCGACAATG 
ACACAGCTGA AAAATCCTGT CCTGATGGCG ACGATCGGTG CGGCGCAGGG GCTGCGCGGC
GAGGTGAGGG TGAAGTCTTT CACGGACGAT CCGACGGCAC TTGGGGATTA TGGAAATCTC
CACAGCGAGG ACGGCCGCGT CTTCGAGGTG CTCGAAATTC GCGAGGCGAA GAATGTGGTC
GTCGTGCGGT TTCGCGGTGT CAACGACCGA ACGGCTGCCG AGGCGCTCAA CGGGCTCGAG
CTCTTCATCG AGCGCGACAA TCTTCCCGAT GACGATCTGG ACGAGGACGA GTTCTTCTAT
GCCGATCTCG AGGGCATGGA GGCGGTCGAC CGCACCGGCA AGAGCTATGG TTCGGTGACC
GGTGTCTTTG ACTTCGGTGC TGGCGATCTT CTCGAACTCA AGGGCCCGGG CCTGCGGCCG
GTGCTGATTC CATTCACCGA ATGGTCGGTG CTCGAAATCG ACCTCGAAGC GGGCAAACTC
GTCATCGACC CGACTGCAGC AGGGCTGGTC GATGATGAGA AGAGTGGCCC AGGCAAGCCG
TTTCCGACCA AGCGCAAGTG A
 
Protein sequence
MLFSRWISGA WASSLWMPTM TQLKNPVLMA TIGAAQGLRG EVRVKSFTDD PTALGDYGNL 
HSEDGRVFEV LEIREAKNVV VVRFRGVNDR TAAEALNGLE LFIERDNLPD DDLDEDEFFY
ADLEGMEAVD RTGKSYGSVT GVFDFGAGDL LELKGPGLRP VLIPFTEWSV LEIDLEAGKL
VIDPTAAGLV DDEKSGPGKP FPTKRK