| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3095 |
|---|
| Symbol | |
|---|
| ID | 5323974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3242073 |
|---|
| End bp | 3243617 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640792045 |
|---|
| Product | signal recognition particle protein |
|---|
| Protein accession | YP_001328756 |
|---|
| Protein GI | 150398289 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGA GCCTCCAGGA CCGTCTTGGT TCCATACTGA ATGGACTGAC CGGCCGCGGC
GCCCTGTCGG AAGCCGATGT TTCCGCAGCG CTTCGGGAGG TTCGCCGTGC GCTGCTCGAA
GCGGACGTCG CACTCGACGT CGTGCGGTCC TTCACGGAAA AGGTTCGTGA GAAGGCGGTC
GGCGCCGAAA TCGTCAAGTC GATCAAGCCC GGCCAGATGG TCGTCAAGAT CGTTCATGAC
GAGCTCGTGG CGATGCTCGG ATCCGAGGGC GTCACGATCG ATCTCAACGC TCCGGCTCCC
GTCGTTATCA TGATGGTGGG CCTGCAGGGC TCGGGCAAGA CCACGACGAC CGGCAAAATC
GCCAAGCGGC TGACCGCGCG GGACAAGAAG AAGGTCCTGA TGGCCTCGCT CGATACCCGC
CGCCCGGCCG CGCAGGAGCA GTTGCGCCAG CTCGGCGTGC AGACGGGGGT CGACACGCTG
CCGATCATTG CCGGCCAGTC GCCGACCGAT ATCGCCGCGC GCGCGGTACA GGCGGCCAAG
CTCGGCGGCC ACGATATCGT CATCCTCGAC ACAGCCGGAC GCACCCATAT CGACGAGCCG
TTGATGATGG AGATGGCGGA GATCAAGCGG AAATCCAGCC CGCACGAAAT CCTGCTCGTC
GCCGATGCGC TGACGGGCCA GGACGCCGTC AATCTCGCCC GCAGCTTCGA TGAACGCGTC
GGCATCACCG GCCTGGTCCT GACCCGTATG GACGGCGACG GCCGCGGCGG TGCGGCGCTC
TCCATGCGTG CCATCACCGG CAAGCCGATC AAGCTCATCG GCGTCGGCGA AAAGATGGAC
GAACTCGAGG AGTTCCACCC CCGCCGCGTC GCCGACCGGA TACTCGGCAT GGGCGACATC
GTCTCGCTGG TCGAAAAGGC GGCGGAGAAC ATCGACGCCG AAAAGGCGGC GGCCATGGCC
GCCAAGATGG CCAAAGGCAA GTTCGACCTC AACGACCTCG CCGATCAGCT GCAGCAGATG
CAGAAGATGG GCGGCATGGG CGGCATCATG GGGCTGATGC CCGGCATGGC CGGCATGAAG
GACAAGATGT CCGCCGCCGG CCTGGATGAC AAGCTCTTCA AGCGCCAGAT CGCGATCATA
TCGTCCATGA CCAGGACCGA GCGCGCCAAT CCGGACATCC TCAAGCATTC GCGCAAGAAG
CGCATCGCCA GCGGCTCCGG CACCGATGCC TCCGACATCA ACAAGCTTCT GAAGATGCAC
CGCCAGATGG CGGACATGAT GAAGATGATG GGCGGCAAGG GCAAGGGCGG CATGATGAAG
CAGATGATGG GTGGCCTTGC CGGCAAGATG GGGCTTGGCG GCCTCGGTGG CGGCATGCCG
GATCTGTCGA AGCTCGACCC GAAGCAACTC GAGGCCCTGC AGAAGCAGGC CGAAGCCGCC
GGCCTCGGCA AGCCCGGCGG TGGCTTGCCT GGCCTTGGTG GCGGTGGATT GCCGGGCCTG
GGAGGCGGTT TCCCCGGTCT CCCCGGCCTG CCGAAAAAGA AGTGA
|
|---|
| Protein sequence | MFESLQDRLG SILNGLTGRG ALSEADVSAA LREVRRALLE ADVALDVVRS FTEKVREKAV
GAEIVKSIKP GQMVVKIVHD ELVAMLGSEG VTIDLNAPAP VVIMMVGLQG SGKTTTTGKI
AKRLTARDKK KVLMASLDTR RPAAQEQLRQ LGVQTGVDTL PIIAGQSPTD IAARAVQAAK
LGGHDIVILD TAGRTHIDEP LMMEMAEIKR KSSPHEILLV ADALTGQDAV NLARSFDERV
GITGLVLTRM DGDGRGGAAL SMRAITGKPI KLIGVGEKMD ELEEFHPRRV ADRILGMGDI
VSLVEKAAEN IDAEKAAAMA AKMAKGKFDL NDLADQLQQM QKMGGMGGIM GLMPGMAGMK
DKMSAAGLDD KLFKRQIAII SSMTRTERAN PDILKHSRKK RIASGSGTDA SDINKLLKMH
RQMADMMKMM GGKGKGGMMK QMMGGLAGKM GLGGLGGGMP DLSKLDPKQL EALQKQAEAA
GLGKPGGGLP GLGGGGLPGL GGGFPGLPGL PKKK
|
|---|
| |