Gene Smed_3094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3094 
Symbol 
ID5323973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3240738 
End bp3241751 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content63% 
IMG OID640792044 
Producthypothetical protein 
Protein accessionYP_001328755 
Protein GI150398288 
COG category[R] General function prediction only 
COG ID[COG2220] Predicted Zn-dependent hydrolases of the beta-lactamase fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.815715 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAA GCGGCAATCC CTATCATGGC GGCCCGGTTT CGGACCATTT CGACGGGCTT 
CGATTCTACA ATCCGGGCGG CACGCCGCCG CGTGGATTAG CCGACCTCCT GCACTGGCAG
TTCGGCGGTG GACGGGTGGC GTGGCCGGCT CGTTACGACA GCCCTTTCCC CCAGGCGAAG
CCCGAACTTT CCGTCGCCGG CGATCGGCTG CGTGTGACCA TGGTCGGTCA CGCGACCCTT
TTGATCCAGG TCGCGGGCAT CAACATATTG ACCGATCCGG TCTGGTCTCG TCGCGCAAGC
CCCTTCACCT TTGCCGGACC TCTTCGCCGC AACGCGCCGG GCGTCCTGAT GAGCGACCTG
CCGCCGATCG ACCTCGTGCT GGTCACGCAC AACCACTATG ACCACCTCGA CATCGATACA
TTGAGTACAC TTCACGCCCA GCACGCACCA CAGATCATCA CGCCGCTCGG TAATGACGCG
ATCATTCGCC GCTCAATCCC GAATGCGGAG ATCCGCGCCG TCGACTGGGG CGATCGCATG
GAACTCGAAG GCGCCGTCGT TCATGCGGAG CCCTGTCATC ATTGGTCGGC CCGCCATTTG
CGCGACCGGC GGATGGCGCT CTGGGCCGCC TTCGTCATCG AAACGCCGGC CGGCAAGATC
TACCATGTCG GCGATACAGG CTTTCACGAC GGCATCAATT ATCGGGCGGC GCGCGAGAAG
CACGGCGGCT TCAGGATCGC CAATCTGCCA TTCGGGAGCT ACGAACCCCG ATGGTTCATG
GCATCGCAGC ACCAGAATCC GGAAGAGGCG GTCATGGGTA TGGTCGCTTG CGGAGCCGAA
CACGCGGCGG GTCATCATTG GGGCACCTTC CGGCTGACCA ATGAAGGGGT CGAGGAGCCC
CTCCGGGCGC TCGAGACAGC GCTCGACGGG GCCGGCATAG AGCGCAGCCG GTTCAGGGCA
CTGCGACCCG GAGAGGTCTT CGATGTCCCT GCCTCGTCTT TGGCAAGGGA ATGA
 
Protein sequence
MKKSGNPYHG GPVSDHFDGL RFYNPGGTPP RGLADLLHWQ FGGGRVAWPA RYDSPFPQAK 
PELSVAGDRL RVTMVGHATL LIQVAGINIL TDPVWSRRAS PFTFAGPLRR NAPGVLMSDL
PPIDLVLVTH NHYDHLDIDT LSTLHAQHAP QIITPLGNDA IIRRSIPNAE IRAVDWGDRM
ELEGAVVHAE PCHHWSARHL RDRRMALWAA FVIETPAGKI YHVGDTGFHD GINYRAAREK
HGGFRIANLP FGSYEPRWFM ASQHQNPEEA VMGMVACGAE HAAGHHWGTF RLTNEGVEEP
LRALETALDG AGIERSRFRA LRPGEVFDVP ASSLARE