| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3093 |
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| Symbol | dapF |
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| ID | 5323972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3239739 |
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| End bp | 3240617 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640792043 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001328754 |
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| Protein GI | 150398287 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.99362 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGGC TTGGAAACAA GATCCTGGTG GTCGACATGC GTGGCCGCAA GGACCGCGTG
ACGCGTCAGG CTGCAATAGT GCTCAACGCC GACCCGGCAA CCGAGTTCGA CCAGATCATG
GCGATCCATG ATCCGAAGTC CGCCGGCACC GACGCGTGGA TCGACATCGT CAATTCCGAC
GGGTCGATGG CCCAGGCCTG CGGCAACGGC ACCCGCTGCG TGGTCCAGGC GCTTGCGGCC
GAGACCGGCA AGAAGGCCTT CCTCTTCCAC ACGGTTGCGG GCCTCCTTGA AGCGAAGGAG
CATGACGACG GCTCTATTTC GGTCGATATG GGCAAGCCGC GTTTCCGCTG GGACCAGATA
CCGCTCGCCG AGGAGTTCCA TGACACGCGC CGGATCGAGC TGCAGATCGG ACCCATCGAG
GCTCCCGTGC TGCACTCTCC TTCCGTTGTA TCCATGGGCA ATCCTCACGC GATCTTCTGG
GTCGAAAACG ACGTGTCCGG CTACGATCTC GATCGTTTCG GACCGCTCCT CGAGAACCAC
CCGATCTTCC CTGAACGGGC CAATATATCG GTCGCCCGCA TCCGCTCCCG CCAGGAGATG
GACCTGCGGA CCTGGGAGCG CGGCGCCGGC CTGACGCTTG CCTGCGGCTC GGCCGCCTGT
GCCGCTGCCG TCAGCGGTGC GAGAACAGGC CGCACGGAGC GCGCGGTGAC CGTAAATGTG
CCCGGAGGAC CACTTCGGAT CGAATGGCGC GAAAGCGACG ACCACGTCAT CATGACCGGC
CCGGCCGAAT GGGAATGGTC CGGCACGCTC GACCCTGTCA CCGGCATTTT CGAGCGGAAC
GAGCCGGAGA GCGGCGACAT CGGAGCCCGA GCGCCTTGA
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| Protein sequence | MNGLGNKILV VDMRGRKDRV TRQAAIVLNA DPATEFDQIM AIHDPKSAGT DAWIDIVNSD
GSMAQACGNG TRCVVQALAA ETGKKAFLFH TVAGLLEAKE HDDGSISVDM GKPRFRWDQI
PLAEEFHDTR RIELQIGPIE APVLHSPSVV SMGNPHAIFW VENDVSGYDL DRFGPLLENH
PIFPERANIS VARIRSRQEM DLRTWERGAG LTLACGSAAC AAAVSGARTG RTERAVTVNV
PGGPLRIEWR ESDDHVIMTG PAEWEWSGTL DPVTGIFERN EPESGDIGAR AP
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