Gene Smed_3054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3054 
Symbol 
ID5323933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3204509 
End bp3205315 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content61% 
IMG OID640792004 
Productexodeoxyribonuclease III 
Protein accessionYP_001328715 
Protein GI150398248 
COG category[L] Replication, recombination and repair 
COG ID[COG0708] Exonuclease III 
TIGRFAM ID[TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.589919 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCTTT CCATTGCCAC ATGGAACATC AACTCCGTTC GCCTGCGGAT GCCGCTGGTC 
GAACATTTCC TGAAGACATG GCAGCCGGAC ATCCTCTGCC TGCAGGAAAT CAAATGCATC
AACGACCAGT TTCCCTCCGC GCCGCTGCGC AAGCTCGGCT ACGAATATAT CGAGATGCAC
GGCCAGAAGG GCTATCACGG CGTCGCCACT ATCTCGCGCC TGCCGCTTCA CCAGCTGAGC
GATCGTCGCG ATTATTGCGG TATCGGCGAT GCACGGCATC TCTCGGTCGT TTTCGCAGCC
GGGGGAAAGA CGATCCGCCT GCACAACTTC TATGTCCCGG CCGGCGGCGA CGAGCCGGAC
CGCACTGTCA ACCCGAAGTT CGGACACAAA CTCGACTTCG TCGATGAGAT GAAGCTCCTG
CACGCGGAGG CCGAAGAAGG TATCTCTTCG ATCCTCGTCG GCGATCTCAA CATCGCGCCG
CTCGAGCACG ACGTCTGGTC GCACAAGCAG CTCCTTAAGA TCGTCAGCCA TACGCCGATC
GAGACCGAAG GCCTTATTTC GGTCATGACC GGCGGCGCCT GGGTCGACCT GATGCGCCGC
CACACGCCAC CGCCGGAAAA GCTCTACACC TGGTGGAGTT ACAGGGCCAA GGACTGGGCC
GCAGCCGACC GCGGACGCCG CCTCGACCAC ATCTGGTCCT CCGCCGATCT CGCAAACCAG
CTCGTCCGCG TCGAAATCAT CAAGGAAGCG CGCGGCTGGG AGCGCCCATC CGACCACGTC
CCGGTGATCG CCCATTTCGA GCTTTGA
 
Protein sequence
MPLSIATWNI NSVRLRMPLV EHFLKTWQPD ILCLQEIKCI NDQFPSAPLR KLGYEYIEMH 
GQKGYHGVAT ISRLPLHQLS DRRDYCGIGD ARHLSVVFAA GGKTIRLHNF YVPAGGDEPD
RTVNPKFGHK LDFVDEMKLL HAEAEEGISS ILVGDLNIAP LEHDVWSHKQ LLKIVSHTPI
ETEGLISVMT GGAWVDLMRR HTPPPEKLYT WWSYRAKDWA AADRGRRLDH IWSSADLANQ
LVRVEIIKEA RGWERPSDHV PVIAHFEL