Gene Smed_3018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3018 
Symbol 
ID5323896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3167408 
End bp3167935 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content63% 
IMG OID640791968 
Productdinucleoside polyphosphate hydrolase 
Protein accessionYP_001328680 
Protein GI150398213 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAACG AAAAGGGGCG CGTCATGAAG GCAGAGGACC TGCCCTACCG GCCATGCGTG 
GGCGCCATGG TTCTCAACCA GCAGGGACTG GTCTGGGTCG GGCATCGGCT CGCCGTCGGC
AATTCGGAAT ATGACGGGTC GCCGCAGCTC TGGCAGATGC CGCAAGGGGG CATCGACGAG
GGAGAGGACC CGCTCGAGGC CGCCTACCGC GAACTTTACG AAGAGACCGG CATCCGCTCG
GTTTCGCTCA TCGCCGAGGC GCCGGACTGG ATCAATTACG ACCTTCCTTC GCACCTGATC
GGGATCGGAC TCAAGGGCAA GTATCGCGGG CAGAGGCAGC GCTGGTACGC CTTCCGCTTC
GAGGGCGACG AAAGCGAGAT CGCCATCAAC CCGCCGCCCG GCGGTCATGA GCCGGAATTC
GACGCCTGGG AATGGAAGCC CATGCATGCG CTGCCAGGTT TGATCGTTCC CTTCAAACGC
AAAGCCTATG AAGAGATCGT CGCGACGTTC TCGCATCTGG TGCGTTGA
 
Protein sequence
MGNEKGRVMK AEDLPYRPCV GAMVLNQQGL VWVGHRLAVG NSEYDGSPQL WQMPQGGIDE 
GEDPLEAAYR ELYEETGIRS VSLIAEAPDW INYDLPSHLI GIGLKGKYRG QRQRWYAFRF
EGDESEIAIN PPPGGHEPEF DAWEWKPMHA LPGLIVPFKR KAYEEIVATF SHLVR