| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3016 |
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| Symbol | |
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| ID | 5323894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3164381 |
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| End bp | 3165703 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791966 |
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| Product | carboxyl-terminal protease |
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| Protein accession | YP_001328678 |
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| Protein GI | 150398211 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.55561 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACGTA GAGCTTCACT TGTCCTGGTC GGGGCGCTGA TGGGCGCGAC GGCGATGGGC
GTCGTCTATT CGGCAACGAT GCCGGCCGTG GCCGCGAATT CGTCGACATA CCGCGAACTC
GCCATCTTCG GCGACGTCTT CGAGCGCGTG CGTGCGCAGT ATGTGACGCC GCCCCAGGAC
GACAAGCTGA TCGAGAACGC GATCAATGGC ATGCTCACCT CGCTCGACCC GCATTCGAGC
TACATGAACT CGGCCGATGC CGAAGACATG CGCACCCAGA CGCGCGGCGA GTTCGGCGGC
CTCGGCATCG AGGTCACCAT GGAGGAAGAC CTCGTCAAGG TAACGAGCCC GATCGACGAC
ACGCCCGCCG CCCGCGCCGG CGTGCTGGCA GGCGATTTCA TTTCGAAGAT CGACGGCCAG
GACGTCCGCG GCCTGAAACT CGAAGAGGCG GTCGACAAGA TGCGCGGCGC CGTCGGCACG
CCGATCAAGC TGACGATCCT TCGCAAGGGA GCCGAAAAAC CGATCGAGCT GACGATCGTA
CGCGACGTGA TCGCCGTACG CGCGGTGAAG GTGCGTGTCG AAGGCGATGT CGGCTATCTC
AGGGTTATCT CGTTTACGGA AAAGACCTTC GAAGACCTGA AGAAGGGCAT TGAAAAGATT
CAGGCGGAAG TTCCGGTGGA CAAGCTCAAG GGCTATGTTC TCGATCTGCG CCTCAACCCG
GGCGGCCTGC TCGATCAGGC GATCAATGTT TCGGACGCGT TTCTGGAGCG TGGCGAGGTC
GTTTCGACCC GCGGCCGCAA TCCGGACGAA ACCCGCCGTT TCAATGCGAC CCCCGGCGAT
CTCGCCGACG GCAAGCCCGT CGTCGTGCTC GTCAACGGCG GCTCGGCATC CGCTTCGGAA
ATCGTGGCCG GAGCGCTGCA GGACCTGAAG CGGGCGACCG TTCTCGGCAC GCGCTCCTTC
GGCAAGGGCT CGGTGCAGAC GATCATCCCG CTCGGCGAGG CCGGCGCACT GCGCCTGACG
ACGGCGCTCT ATTACACGCC GTCCGGCAAG TCGATCCAGG GCACCGGCAT CACGCCGGAC
ATCAAGGTCG AGCAGCCGCT GCCCCCCGAA CTTCTGGGCA AGGTGGAAGC GCAGGGCGAA
TCCGATCTCA GAGGCCACAT TCCGGGCCAG GAAGAGACCG AAGAAGGCTC CGGTTCCGTT
GCCTACGTGC CACCGGAGAC CAAGGACGAC ATTCAGCTCA ACTATGCGTT CGACCTCTTG
CGCGGCAAGA AGACGGATCC GTCCTTCCCG GCCAATCCGC AGCAGGCGCA GCTGAAAGAA
TAG
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| Protein sequence | MIRRASLVLV GALMGATAMG VVYSATMPAV AANSSTYREL AIFGDVFERV RAQYVTPPQD
DKLIENAING MLTSLDPHSS YMNSADAEDM RTQTRGEFGG LGIEVTMEED LVKVTSPIDD
TPAARAGVLA GDFISKIDGQ DVRGLKLEEA VDKMRGAVGT PIKLTILRKG AEKPIELTIV
RDVIAVRAVK VRVEGDVGYL RVISFTEKTF EDLKKGIEKI QAEVPVDKLK GYVLDLRLNP
GGLLDQAINV SDAFLERGEV VSTRGRNPDE TRRFNATPGD LADGKPVVVL VNGGSASASE
IVAGALQDLK RATVLGTRSF GKGSVQTIIP LGEAGALRLT TALYYTPSGK SIQGTGITPD
IKVEQPLPPE LLGKVEAQGE SDLRGHIPGQ EETEEGSGSV AYVPPETKDD IQLNYAFDLL
RGKKTDPSFP ANPQQAQLKE
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