| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3014 |
|---|
| Symbol | |
|---|
| ID | 5323892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3162247 |
|---|
| End bp | 3162729 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640791964 |
|---|
| Product | rRNA large subunit methyltransferase |
|---|
| Protein accession | YP_001328676 |
|---|
| Protein GI | 150398209 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1576] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0634983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.903693 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCG GACTTTTCGC AGTGGGCCGC CTCAAGGCGG GCCCGGAGAA GGATCTTGCC
GTCCGCTATC TCGACCGGTT CGCCAAGACG GGGCCGGCGG TCGGCCTCGA GCTGGCCCGC
GTCGCCGAGA TGGTTGAGAG CCGCGCTGCC AACGCCGAGA CGCGCAAACG CGAGGAGGCC
GTTCAGCTCG AAAAGGCACT CGTCGACGGC AGCCTTCTCG TGTTGCTCGA CGAGCGCGGC
AAAGCGCTCG ACTCGGAAGC CTTCGCGAAC CTGCTCGCTA CTTTCAGGGA CAGCGGCAAA
CGCGATCTCA TGATCGCGAT CGGCGGCGCA GACGGCCTCG ACCCGGCGCT CCACGCACGG
GCGGACGCCG TGCTGTGCCT CGGCAAGATG ACCTGGCCGC ACCAGCTCGT TCGGATCCTT
ATCGCCGAGC AGCTCTACCG GGCCGTGACG ATCCTCTCGG GGCACCCCTA TCATCGGGCG
TGA
|
|---|
| Protein sequence | MRIGLFAVGR LKAGPEKDLA VRYLDRFAKT GPAVGLELAR VAEMVESRAA NAETRKREEA
VQLEKALVDG SLLVLLDERG KALDSEAFAN LLATFRDSGK RDLMIAIGGA DGLDPALHAR
ADAVLCLGKM TWPHQLVRIL IAEQLYRAVT ILSGHPYHRA
|
|---|
| |