| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3001 |
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| Symbol | |
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| ID | 5323878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3150222 |
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| End bp | 3152303 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640791952 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001328665 |
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| Protein GI | 150398198 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAACG CACTACCCAT TCGAATTGGT TTTCTGCTAT TGGCCGTCGC TCCAATCCTC
TTTTGGATGC TGCTTGGCGT TTCCTGGGCA CAGCAGGCTC CCGTCGGCGT GCCGCCCGAA
AAGGCCCAAC AGTTTCTCGG TCTGCTCTCT GATCCCGAGG TGAGGACATG GCTCGAGGGA
AAAATTCCTT CAGCTGCGGC GGAACCCCCT GCCGCGTCGC CCGCCGATAC GATTTCGAGC
TGGGAGGCAG CCATCCGCGA TCGCATCGGT GGGCTTTTGG GCGCAGTTCC CCGCATACCG
GAGGAGCTGG CAAGCGGCGC CGCTGTTGTC TCGCGCGACG TGAACTCGGG AAGGCCCGGG
CTTGTGGTCA GCATATTGGC CGTACTGATC GCCGCTGGCC TGGGCGCCGA GTGGCTGATC
CGAAGGGTCT TTGCCCGGGC ACGTAAATCC GGCACAATAG AGGAAGCCGG ACAGGAGATC
CTGTCGGAGG TCGCTGCCTT GCTGACGTTT GCCTTGGCCA GCATCGGTTC GTTCCTGGTA
TTCGAATGGC CGCCCTTGCT GCGTAAGATC ATCCTTACGC TGCTTGTAGC CTTAATCGTG
TTTCGGGCCG TTCGGGCGAT CAGCAAATTT CTGTTTGCCG TGAGCGGCTC CAACGGCATT
GCCGATCAGC CGATGTCAGC TTTGGCAAGC GATGCGGCAC CTCGTTTCTG GCTTTGGCGG
ATCAGCCTTG TTGCCGGCTT TCTGCTGTTC GGTTGGGCCA TCGTCAGCCT CATGCCGGAG
CTGGGTTTTT CCATCGAGGT GGTTCGGCTC ACCGCGTTTC TGGTCGGGTT GGGCATTCTG
GCAACCGCGG TCGAAGTCGT CTGGCGGCGC CCCGACAAGC CGGCTTCACT TGTCGTCAAG
TCACTGCTTA CCCTCTATCT CGTCGTGCTT TGGTCGGCTT GGGTCATGGG ATTGCTGGGA
GTGCTGTGGC TCGGGATCTA TTCGCTGCTG TTGCCGGCTC TGGTGCGGGG CGTTGGCGAT
GTGGCGCAGG CCTTAGCAAC CAGAGCACAG CGCACCGGGG CCCCCGGCAT CGTACTGGGC
GTGCTCATCG TCAGGGGTGC CAGGGCAGCG GTGATCGCCG CCGCGGTCGC ATGGCTCGCC
TACATCTGGC GCATCAGAGC TGCAGCCCTC GCCGGCAGCG AACCCGGCGC GATCGTGATA
CCTGGATTGC TCAACGGTAT TATCGCCCTC TTGGTCGCCG ACCTGCTTTG GCAGATGTCA
AAGGCATTGA TCGCCTATCG CATGGGACTT GGGCCGAAGG ACGGTTCCAA CGCCGATGAA
CTCGCCCGCA GTGGCCGCTT ACGGACGCTC TTGCCGATAT TCCGCAACGT GCTCGCTGTC
TTCATCGGCG CCGTCACCGT GCTGACGATC CTGTCCGGGC TGGGCGTACA GATAGCACCC
TTGATCGCGG GGGCGGGTAT TTTCGGCGTT GCCATCGGAT TCGGATCGCA GACGCTGGTC
AAGGACGTAC TCAGCGGCGT TTTCTACATG CTCGACGATG CCTTCCGTGT CGGTGAATAC
ATCCAGAGCG GCAGCTACAA AGGCACGGTC GAATCGTTCA GCCTGAGGTC GGTCAGGCTT
CGGCATCACC GCGGCCCGAT CTTCACGGTG CCGTTCGGGG AGTTGGGAGC CGTTCAGAAC
ATGAGCCGCG ACTGGGTGAT CGACAAGATG ACGCTCAACG TCACTTACGA TGCCGACGTA
GACCTCGCAC GGAAGCTCAT CAAGAAGGTC GGTCAGGAGC TGGCTGCGGA TCCGGAGTTC
GCGGCAGACA CGATTGAGCC CTTGAAAATG CAGGGTGTCG ACAGCTTCGG CGACTTTGCG
ATCGTGCTCA GGATGAAGCT GATGACCAAA CCGGGCGCGC AGTTCACTAT GAAACGGCGG
GCTTTCATGA TGATCAAGAA GGCCTTCGAT GAGAACGGCA TCAGGATCGC GGTTCCAACC
GTTCATGTTT CTGGAGGAAG CGACAACGCC GCCGCCGCGC AGCAAGCGCT GAACATGAGC
AAGGCCGCCG AGCTGGCGGC CAAGGCACCT GTCGCCCCCT AA
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| Protein sequence | MSNALPIRIG FLLLAVAPIL FWMLLGVSWA QQAPVGVPPE KAQQFLGLLS DPEVRTWLEG
KIPSAAAEPP AASPADTISS WEAAIRDRIG GLLGAVPRIP EELASGAAVV SRDVNSGRPG
LVVSILAVLI AAGLGAEWLI RRVFARARKS GTIEEAGQEI LSEVAALLTF ALASIGSFLV
FEWPPLLRKI ILTLLVALIV FRAVRAISKF LFAVSGSNGI ADQPMSALAS DAAPRFWLWR
ISLVAGFLLF GWAIVSLMPE LGFSIEVVRL TAFLVGLGIL ATAVEVVWRR PDKPASLVVK
SLLTLYLVVL WSAWVMGLLG VLWLGIYSLL LPALVRGVGD VAQALATRAQ RTGAPGIVLG
VLIVRGARAA VIAAAVAWLA YIWRIRAAAL AGSEPGAIVI PGLLNGIIAL LVADLLWQMS
KALIAYRMGL GPKDGSNADE LARSGRLRTL LPIFRNVLAV FIGAVTVLTI LSGLGVQIAP
LIAGAGIFGV AIGFGSQTLV KDVLSGVFYM LDDAFRVGEY IQSGSYKGTV ESFSLRSVRL
RHHRGPIFTV PFGELGAVQN MSRDWVIDKM TLNVTYDADV DLARKLIKKV GQELAADPEF
AADTIEPLKM QGVDSFGDFA IVLRMKLMTK PGAQFTMKRR AFMMIKKAFD ENGIRIAVPT
VHVSGGSDNA AAAQQALNMS KAAELAAKAP VAP
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