| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2951 |
|---|
| Symbol | |
|---|
| ID | 5323828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3100121 |
|---|
| End bp | 3101326 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640791902 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_001328615 |
|---|
| Protein GI | 150398148 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCG CCGATCCTGA ACTGATGCGC GCAATAAACC GCTTCAATGT GCTCGATACG
ATCCGCCGAC ACGGCCCCAT TTCACGTGTC GAGATCAGCG AGCGCACCGA ACTGTCCACC
ACTACGGTCT CAGCCATCAC CGCATCGCTG CTCGACGACG GACTCATCCT GACCAGGCAC
GAGGGCGACA TCCGCAACGC TGCCGCAAGG GGGCGTCCAC GCGTCATGCT GGAGCTCAAT
CCGGAGGCCG CACGCGTCGT CGGCGCGAAA ATTGCCGCCA ACCGCATGGT CTTTGCCGTC
ACCAACTTCC GAGGAGAGGT TCTCTCCAAC CTGACTTTGC CGATCCGGGT CGACCGCCAG
CCCATCGCCG TCATTGCCGA CCTGATCGAG GACGGCGTGC GGCGCTGCGT CGTCGACGCC
GACCTTTCCC TCGACGACAT CGATTCGATC TGCATCGGCC TTCCCGGCGT CGTGGAGCAC
CGCACCGGCC ATGTCCGATC GAGCCCGATA TTTCGTGAGA CCAATGTCGA TTTTGCAAGC
GAAATGACTA GCAGGCTTGA TGTGGCGACT ATCGTGGAGA GCGACGCTCA CGCGATCACA
CTTGCTCACC ATTGGTTCGG CCGCGCCCGC GACCTCGACG ACATGGTGCT CGTCTCGCTC
GAGCAAACGC TCGGGCTCGG CGTACTGCAT GCCGGCCAGC TTTTCCGCGG CGCCGGAGGA
CTGAGCCACA ATCTCGGCGA TCTCGTGCTC GGAGTCGGCC GGAGCGAGAC CATCCGCCTC
TCCATGCTCG CCGGGGAAAA AGCGATCCTC GGCGAACACG CCATGGACGG GCGATTTGCC
GAGGCGGTGC GCCTCGGGCG GGGCATGACG CATGCGCAGA CGCTGATCGC AGCGGAGGAT
GACGCACTGA TCGCGGCGGC TTCGCGCGCC GGAGAAGCGA TCGGGCTCGC CGTCGCCAAC
ATCGTTACGC TGTTCGGACC GCCACGGGTC GTCATCGTCG GTTCGAGCCT GTCGCTCGGC
ACCGTTTTCG TGGAGAGCAT AGGCCGGTCC TACCGGGACG CGATCCCTCC CTCGATCTCG
ACGGTGGCGG AACTCGTTTT CGACGAATCG GCCGACGAGA CCTGGGCGCA GGGAGCGGCC
GTCGTGGCGC TCTGCGAACT CTACGAGTCC CCCTGGGGGA CGACCGGACC GGCGCCGGCG
CTTTGA
|
|---|
| Protein sequence | MKTADPELMR AINRFNVLDT IRRHGPISRV EISERTELST TTVSAITASL LDDGLILTRH
EGDIRNAAAR GRPRVMLELN PEAARVVGAK IAANRMVFAV TNFRGEVLSN LTLPIRVDRQ
PIAVIADLIE DGVRRCVVDA DLSLDDIDSI CIGLPGVVEH RTGHVRSSPI FRETNVDFAS
EMTSRLDVAT IVESDAHAIT LAHHWFGRAR DLDDMVLVSL EQTLGLGVLH AGQLFRGAGG
LSHNLGDLVL GVGRSETIRL SMLAGEKAIL GEHAMDGRFA EAVRLGRGMT HAQTLIAAED
DALIAAASRA GEAIGLAVAN IVTLFGPPRV VIVGSSLSLG TVFVESIGRS YRDAIPPSIS
TVAELVFDES ADETWAQGAA VVALCELYES PWGTTGPAPA L
|
|---|
| |