Gene Smed_2937 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2937 
Symbol 
ID5323814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3083742 
End bp3084494 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content67% 
IMG OID640791888 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001328601 
Protein GI150398134 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.75761 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACG GACCTGTGCT TCTCGTCACC GGGGGCAGCC GCGGCATCGG CGCCGCGATT 
GCGCTTGCCG CGGCCAGCGA GGGTTGGAGG GTCGCGGTCA ACTACGCGTC CAATCGCAAC
GCGGCCGAAG AGGTGGTCCG ACGCATTTTG CAAGCTGGGG GCACAGCCGT TTCCGTCGAA
GGCGACGTGG GCAGGGAAGA GGGGGTCAAG GCGATCTTTG CCGCCGTCGA CTCCGTCTTC
GGCCGTCTCG ACGGTCTCGT CAACAATGCC GGCATTATCG GCCCGCCGCA GCGCGTGGAC
GAGATTTCGC CTGAGCGAAT CGAGCGGCTT TTCCGCATCA ATGTGACCGG CTCCATCCGT
TGCGCCGCCG AGGCGGTGCT CCGGATGTCG ACGCGTCACG GCGGGCGGGG GGGCTCGATC
GTCAATCTCT CCTCCATCGC TGCCGTGCTT GGCGCGCCCG GGCAATATGT CGACTACGCA
GCCACGAAGG GCGCGATCGA CAGCTTCACC GTCGGACTGG CGCGTGAAAC CGCCACCGAG
GGCATACGCG TGAACGCGGT CCGGCCCGGC GTCATCGACA CGGAAATCCA TGCCTCCGGC
GGGCTGCCCG ACCGCGCCCG CGACCTCGCG CCAACGATCC CGATGCAGCG TCCCGGAACG
GCCGGCGAGG TTGCCGACGC AATTCTCTAT CTCCTGTCCG ACAAGGCAAC GTATGTCACG
GGAACCATTC TCACGGTCAG CGGCGGGCGG TAG
 
Protein sequence
MSNGPVLLVT GGSRGIGAAI ALAAASEGWR VAVNYASNRN AAEEVVRRIL QAGGTAVSVE 
GDVGREEGVK AIFAAVDSVF GRLDGLVNNA GIIGPPQRVD EISPERIERL FRINVTGSIR
CAAEAVLRMS TRHGGRGGSI VNLSSIAAVL GAPGQYVDYA ATKGAIDSFT VGLARETATE
GIRVNAVRPG VIDTEIHASG GLPDRARDLA PTIPMQRPGT AGEVADAILY LLSDKATYVT
GTILTVSGGR