| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2880 |
|---|
| Symbol | |
|---|
| ID | 5323757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3014115 |
|---|
| End bp | 3015335 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640791832 |
|---|
| Product | 5-aminolevulinate synthase |
|---|
| Protein accession | YP_001328545 |
|---|
| Protein GI | 150398078 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes |
|---|
| TIGRFAM ID | [TIGR00858] 8-amino-7-oxononanoate synthase
[TIGR01821] 5-aminolevulinic acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATGG ATTTCGAGAG TTTCTTCAAA AACGAGCTGG ATGGGCTGCA TCAGGAAGGT
CGATACAGGG TTTTCGCCGA TCTCGCCCGT CATCGCGGCA ACTTCCCCAA GGCGACGCGC
TATACGGCCG AAGGCGCCCA GGAAGTGACT GTCTGGTGCT CGAACGATTA TCTCGGCATG
GGTCAGTGTC CCATCGTCAC CGACGCGATG AAGCAGGCGA TCGACGAATG CGGCGCCGGC
GCCGGCGGAA CCCGCAACAT TTCCGGAACC AACCATTACC ATGTGATGCT CGAGCGCGAA
CTTGCCGACC TGCACGGCAA GGAATCGGCG CTTCTGTTCA CCTCCGGTTA CGTTTCGAAC
TGGGCAGCGC TCGGGACGCT CTGTTCCAAG CTTCCCGGCG TCATCGTCTT TTCAGATGCC
GGCAACCACG CTTCGATGAT CGAAGGCATT CGTCACTCGA AATGCGAGCG GGTCATTTTC
AAGCACAATT CGGTGGCGGA TCTCGAGGCG AAGCTTGCAG CCGCCGATCC GCGCGCGCCA
AAGATCATCG CCTTCGAGTC CGTCTATTCG ATGGATGGCG ACATCGCGCC GATCAAGGAA
TTCTGCGACC TCGCGGACAA ATACGGGGCG ATGACATACC TGGATGAAGT GCACGCGGTC
GGCATGTACG GGCCGCGCGG CGGCGGCATC GCCGAGCGCG AAGGGCTGAT GCACCGGCTG
ACCGTCATCG AAGGCACGCT CGGCAAAGCC TTCGGCGTCA TGGGCGGCTA CATCACCGGA
TCGGCCGCGC TCTGCGATTT CATCCGCTCC TTTGCGTCCG GCTTCATCTT CACCACGGCG
CTGCCGCCGG CGCTTGCCGC CGGTGCGCTC GCCTCCATTC GCCACCTCAA GGAAAGCCAG
ACCGAACGCT TCGCGCATCA GGAGCGCGTG CGTCGGCTGC GCTCGCTGCT CGATCAGCGC
GGCATTCCGC ATATGGTGAA TCCCAGCCAC ATCGTGCCGG TCATCGTCGG CGATGCGGCC
AAGTGCAAAT GGATTTCCGA CCTGTTGCTC GACAATTTCG GGGTTTATGT CCAGCCAATC
AACTATCCGA CGGTGCCGAA GAAGACCGAA CGCCTGCGCA TCACGCCGAC CCCCTTGCAT
TCGGATGCCG ATATCGACCA CTTGGTGGGC GCACTGCATT CGCTCTGGTC GCGCTGCGCG
CTCGCAAGGG CGGTGGCGTA A
|
|---|
| Protein sequence | MMMDFESFFK NELDGLHQEG RYRVFADLAR HRGNFPKATR YTAEGAQEVT VWCSNDYLGM
GQCPIVTDAM KQAIDECGAG AGGTRNISGT NHYHVMLERE LADLHGKESA LLFTSGYVSN
WAALGTLCSK LPGVIVFSDA GNHASMIEGI RHSKCERVIF KHNSVADLEA KLAAADPRAP
KIIAFESVYS MDGDIAPIKE FCDLADKYGA MTYLDEVHAV GMYGPRGGGI AEREGLMHRL
TVIEGTLGKA FGVMGGYITG SAALCDFIRS FASGFIFTTA LPPALAAGAL ASIRHLKESQ
TERFAHQERV RRLRSLLDQR GIPHMVNPSH IVPVIVGDAA KCKWISDLLL DNFGVYVQPI
NYPTVPKKTE RLRITPTPLH SDADIDHLVG ALHSLWSRCA LARAVA
|
|---|
| |