| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2865 |
|---|
| Symbol | |
|---|
| ID | 5323741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2998023 |
|---|
| End bp | 2998808 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640791816 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001328530 |
|---|
| Protein GI | 150398063 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.538946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTCG CCACGCCTCT GGTGAACGAA GCGCCGCGGG TGGTCCTCTC CGCCCGCGGG
CTGCGCCGCG ACTTCGGCGG CTTTACCGCC GTCAAGGACG TCGACCTCGA CGTCCATCAT
GCCCGCGTGC ATGCGCTGAT CGGCCCGAAC GGGGCCGGCA AGACCACCGT ATTCAATCTG
CTGACGAAGT TCCTGCAGCC GACACACGGC ACGATTACCC TGCTCGGCGA AGACATAACC
AAGACTGCAC CCGACAAGGT CGCCCGCATG GGCCTCGTGC GCTCGTTCCA GATCTCGGCA
GTGTTTCCGC ACCTCACAGT GCTCGACAAT GTCCGGGTGG CGCTGCAGCG GCCGAACCGC
CTCGCGACCC AGTTCTGGAA ACCTCTTTCG GCGCTGGACG CGCTGAACGG CAAGGCCGAG
GAACTGATCC GTTCGGTCGG TCTCGAGAAG GAAGTGAACG CCGTTGCCGC GGACCTTTCC
TACGGTCGCA AGCGCGTGCT CGAGATCGCC ACCACGCTGG CGCTCGAGCC GAAGGTGCTG
CTGCTCGACG AGCCGATGGC GGGCATGGGG CATGAGGATG TCGGCATGGT CGCCGAGATT
ATCCGCGAAG TGGCACGCGA GCGTGCCGTG CTGATGGTCG AGCACAATCT CTCGGTCGTC
GCCACGCTCT GCCACCACGT CACCGTCCTG CAGCGTGGCG AGATCCTCGC CGAAGGGGAT
TATGCAACGG TGTCGGAGGA CCCACGCGTG CGCACCGCCT ATATGGGCAC GGAGGAGACT
TCCTGA
|
|---|
| Protein sequence | MAVATPLVNE APRVVLSARG LRRDFGGFTA VKDVDLDVHH ARVHALIGPN GAGKTTVFNL
LTKFLQPTHG TITLLGEDIT KTAPDKVARM GLVRSFQISA VFPHLTVLDN VRVALQRPNR
LATQFWKPLS ALDALNGKAE ELIRSVGLEK EVNAVAADLS YGRKRVLEIA TTLALEPKVL
LLDEPMAGMG HEDVGMVAEI IREVARERAV LMVEHNLSVV ATLCHHVTVL QRGEILAEGD
YATVSEDPRV RTAYMGTEET S
|
|---|
| |