| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2842 |
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| Symbol | |
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| ID | 5323712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2967709 |
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| End bp | 2969694 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640791787 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001328507 |
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| Protein GI | 150398040 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.947946 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGCCG AGGTAATTGA TATCGATCTG CAGGCGCAGC CGCCCAGACC GCAATCCGTA
GAGCTGCAAA CGCTCTATCG GAGAGAGGGC GAGGTCGTGC GCCGCATGGA GACCCGACAG
GGTCTCTGGG TAGCCGTGGC CGTCTATATT CTGTTTGCAG CAACGGATAT CCTGCTCGTT
CCGGATGTCG CGTTCTATGC GATCCTGGCA CGTGTTGCGG TGGGCGCCAC GGCGATCACA
GCAATCGAAG TCCTGTTTCG GATGCATGCC CACACGAAAT GGCTCGATCT CACCTGCGCC
GGTGCACTCG TGGCAGGGTA TTGGGGCTGG TTGTTCCCGT CGCTCATGAC GGTCCACGCC
GATAACATTG CCTATTACAT GATTTTCGGC GCGATATTCA TGATGGGCGC CAATCTATTC
TTCAGTTTTC ACTTTCGCCT ATCGGTTGCT ACGTCAGGCA TCGTCCTCGC CACGTTTTTT
CTCGTTATGA TCTTCTACGT TCCGAGAACC GTTTCCTATC AGGTCGCCTT CGGAACCTTC
TACGTCTCGT GTTTCGTCTT CACCTCCTAT GTGAACTGGA AACTCAACCG GGAGCGATAC
AAGGTCTTTC TCAACGCCTT CGAGGCGAAG GTCCAGCAGA AGGAAGCCTC GGAACGCGGA
AAGGCTCTGC TCCGTCTTTC GCACACGGAT TCGCTCACCG GGCTCGACAA CCGCCGTGCT
GTCGACCAGA AGCTGAGGGA TTATTGGAGC GACTGGCAAA GAGGCGGGAA CAGCTTCGCG
GCCGTCCTTA TTGATGTCGA TTTCTTCAAG AGATACAACG ATTTTTACGG CCATCAGGAA
GGCGATCGCT GCCTTGTTCT CGTTGCCAAT GCATTGAAGG ACTCGATCGC GCGCTACGAT
GCCTCGATCG GCCGCTACGG CGGCGAGGAA TTCATCGTAC TCGCAAGGCT GAAGACGAGA
GAGCGAGCGG CGGAACTGGC GGAAGCCATT AGACGCAGCG TCGAATACCT CGCTCTGCCG
CACGAACAGC GCCGCGACGG CATGTCGATC GTAACGGTAA GCGTCGGTGC AGGCTTCACC
CGCAACCAGA TCGGTTCAAA GCTCGAGAGG CTGATCCATG AAGCGGACCG CGCGCTCTAC
GGGGCGAAGG CAAACGGCCG CAACTGCGCG CGCCTCTTCG ACCCGAACGA CCCGCAGACC
AGCGACGAAA GCGAAAACAT CGCCGCGCTC CTGAAAATCG CTATCGACCA GGATCTCGTC
TCACTCGTCT ATCAGCCCAT ACGAGACCTC TCCACCGGCC GGGTGGACGC TGTCGAGGCG
CTGATGCGGT TGAAGATGCT GGACGGCACG TCCGTCCCCC CCAGCCTCTT CATCCCGATA
GCCGAGAGAA CCGGGGCGAT CCTCGACCTC GGCCGCTGGG TCATACGCGT GGTGTGCCTG
GAACTCCTGA CAAGCGAGCA TGTGCCCGTC GTCAGCGTGA ATGTCTCGCC GATCCAACTC
CGATCGCCGG GCTTCGCGGC TTCGGTCGCG TCCATTCTCG GTGAAACTGG GGTGGCCGGG
AGCAGGCTCG CCTTCGAAAT CACGGAGGGC CTCGAGATGG AGATGCATTC CGATATACTG
CGCTGCATCA GCGACTTGAA GACGCTGGGC ATCAGGATAT GGCTTGACGA CTTCGGTACC
GGTTTCGCGG GTCTGTCTTG GCTGCGCCTG ATCGATTTCG ACACGGTCAA GATCGACCGA
TCCTTCCTTC ACGATTGCGA CACACCCAAG GGCAAGGCCA TGCTCAGGGA CATTATCGGC
CTGGTGCGAA ACCGCGGACA CAAGATCCTC GTGGAAGGTG TGGAGACGGA GGAGCAGCTC
ACGCTCATGC GGCAATTCCG GATCGATCAC GTCCAGGGCT TCCATGTCGG GCGCCCGGCG
CCTGCCCGAA GCTTCGAACC TCCTCCACCA TCGGACAGGC GGCGGACCCG CGCAAGTCCG
GTTTGA
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| Protein sequence | MLAEVIDIDL QAQPPRPQSV ELQTLYRREG EVVRRMETRQ GLWVAVAVYI LFAATDILLV
PDVAFYAILA RVAVGATAIT AIEVLFRMHA HTKWLDLTCA GALVAGYWGW LFPSLMTVHA
DNIAYYMIFG AIFMMGANLF FSFHFRLSVA TSGIVLATFF LVMIFYVPRT VSYQVAFGTF
YVSCFVFTSY VNWKLNRERY KVFLNAFEAK VQQKEASERG KALLRLSHTD SLTGLDNRRA
VDQKLRDYWS DWQRGGNSFA AVLIDVDFFK RYNDFYGHQE GDRCLVLVAN ALKDSIARYD
ASIGRYGGEE FIVLARLKTR ERAAELAEAI RRSVEYLALP HEQRRDGMSI VTVSVGAGFT
RNQIGSKLER LIHEADRALY GAKANGRNCA RLFDPNDPQT SDESENIAAL LKIAIDQDLV
SLVYQPIRDL STGRVDAVEA LMRLKMLDGT SVPPSLFIPI AERTGAILDL GRWVIRVVCL
ELLTSEHVPV VSVNVSPIQL RSPGFAASVA SILGETGVAG SRLAFEITEG LEMEMHSDIL
RCISDLKTLG IRIWLDDFGT GFAGLSWLRL IDFDTVKIDR SFLHDCDTPK GKAMLRDIIG
LVRNRGHKIL VEGVETEEQL TLMRQFRIDH VQGFHVGRPA PARSFEPPPP SDRRRTRASP
V
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