| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2740 |
|---|
| Symbol | |
|---|
| ID | 5323610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2854543 |
|---|
| End bp | 2856753 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640791685 |
|---|
| Product | glycogen branching enzyme |
|---|
| Protein accession | YP_001328405 |
|---|
| Protein GI | 150397938 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.296268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTTC CCCCCGGCCA GGATCCAGCT CCCGCCCCGT CAGGCACGCT GCCAGCGCCG
GAAATTGCGG CAATACTTTC CGGCACCCAT AGCGACCCCT TTGCCGTCCT TGGAGTCCAC
GCCGCGGGCA AGACATTTGT TGCCCGATGC TTCATTCCCG GAGCGGAGAC GGTCGTTGCG
GAGACGCTTG CCGGGAACGA ACTCGGCACG CTCGTGCGGC GCGACGAGGC CGGCTTCTTC
GAGGGGCCGG TGGCCTTGAG CAAGGAGCAA CCCGTCCGCT ACCGCGCTCG CAATGGCGGC
GGCGAATGGA CGGTCATCGA TCCCTACAGC TTCGGTCCCG TGCTCGGGCC GATGGACGAT
TACTATATCC GCGAGGGCTC GCATCTTCGC CTCTTCGACA AGATGGGTGC GCATCCGATC
TCGCATGAAG GCGCGGAGGG CTTTCACTTC GCCGTCTGGG CGCCGAACGC GCGGCGCGTC
TCCGTCGTCG GGAACTTCAA TGAATGGGAC GGGCGCCGGC ACGTGATGCG CCTGCGCGTG
GACACCGGTA TTTGGGAAAT CTTCATACCC GGCGTGCCGG TCGGCACACC CTACAAGTAC
GAAATTGTCG ACCGTCAAGG CACGCTCTTG CCGTTGAAAG CCGACCCTTT TGCCCGCCGG
TCGGAACTCA GGCCCGACAC GGCTTCCATG ACGGCGGCCG AAATCGCTCA GGTTTGGGAA
GATGAGGCGC ATCGGCGCCA CTGGGCCGAG CTCGATCCGC GCCGCCAGCC GATCTCGATC
TACGAGGTCC ACGCCGCCTC ATGGCAGCGT CGCGACAATG GCGACATGCT CTCCTGGGAC
GAGCTGGCGG AAAGGCTGAT CCCCTATTGC GTCGACATGG GCTTCACCCA TATCGAGTTC
CTGCCCATTT CGGAATATCC CTATGACCCG TCCTGGGGCT ACCAGACCAC CGGCCTGTAT
GCGCCGACCG CACGCTTCGG CGAGCCGGAG GGCTTTGCGC GCTTCGTCAA CGGTTGCCAC
AAGGTCGGCC TCGGCGTCAT CCTCGACTGG GTGCCGGCGC ATTTCCCGAC GGACGAACAC
GGGCTGCGCT GGTTCGACGG CACCGCCCTC TACGAGCATG CGGATCCACG CCAGGGCTTT
CACCCCGACT GGAACACTGC AATCTACAAT TTCGGCCGTC AGGAGGTCGT CGCCTTTCTG
GTCAACAACG CCCTCTACTG GGCGGAGAAA TTCCATGTCG ACGGCCTGCG CGTCGATGCG
GTCGCTTCGA TGCTTTATCT CGACTATTCG CGAAAGCATG GCGAATGGGT GCCGAACGAA
TATGGCGGCA ACGAAAACCT CGAGGCCGTG CGTTTCCTGC AGACGATGAA TTCCAGCATA
TACGGTATTC ACCAGGGCGT GCTGACCATC GCCGAGGAGT CGACCTCCTG GCCGAAGGTC
TCGCACCCGG TGCATGCGGG CGGCCTCGGC TTCGGGTTCA AGTGGAACAT GGGCTTCATG
CATGACACGC TGCAATATCT CGCGCGCGAG CCCGTTCATC GGAAGTTCCA CCATAACGAC
CTGACTTTCG GGCTGCTCTA TGCCTTCAGC GAAAACTTCG TGCTGCCGCT CTCTCATGAC
GAGGTCGTGC ACGGCAAGGG ATCGCTGATC GCCAAGATGG CCGGCGATGA CTGGCAGAAA
TTCGCCAATC TCAGGGCCTA TTACGGTTTC ATGTGGGGCT ATCCCGGCAA GAAGCTGCTT
TTCATGGGAC AGGAATTCGC GCAGTGGCGA GAGTGGTCTG AGGACCGCGC ACTCGACTGG
AACCTGCTCG AATACAATCT GCACGAAGGA ATGCGCCGCC TGGTGCGCGA CCTGAACGGT
ACCTACCGCT CGAAGCCGGC GCTGCACGCG CGCGACTGCG AGGGCGACGG ATTCGAGTGG
CTGATTGCCG ATGACCGTCA AAATTCCGTC TTCGCCTGGC TCAGGAAAGC ACCCGGTGAG
AAGCTCGTCG CCGTCATCAC CAATTTCACT CCCGTCTACC GCGAACATTA CGACATACCG
CTTCCGGTCG CCGGGCGCTG GAAGGAAATC CTCAACACCG ACGCGGAAAT CTACGGAGGA
AGCGGCAAGG GTAACGGCGG CGCCGTCATT GCGGAAAAGA GAGCGAACGG AGAGACAATC
GCCACCATCA CGCTGCCGCC TCTGGCGGCA CTGATGCTGG AGCAGGATTA G
|
|---|
| Protein sequence | MTVPPGQDPA PAPSGTLPAP EIAAILSGTH SDPFAVLGVH AAGKTFVARC FIPGAETVVA
ETLAGNELGT LVRRDEAGFF EGPVALSKEQ PVRYRARNGG GEWTVIDPYS FGPVLGPMDD
YYIREGSHLR LFDKMGAHPI SHEGAEGFHF AVWAPNARRV SVVGNFNEWD GRRHVMRLRV
DTGIWEIFIP GVPVGTPYKY EIVDRQGTLL PLKADPFARR SELRPDTASM TAAEIAQVWE
DEAHRRHWAE LDPRRQPISI YEVHAASWQR RDNGDMLSWD ELAERLIPYC VDMGFTHIEF
LPISEYPYDP SWGYQTTGLY APTARFGEPE GFARFVNGCH KVGLGVILDW VPAHFPTDEH
GLRWFDGTAL YEHADPRQGF HPDWNTAIYN FGRQEVVAFL VNNALYWAEK FHVDGLRVDA
VASMLYLDYS RKHGEWVPNE YGGNENLEAV RFLQTMNSSI YGIHQGVLTI AEESTSWPKV
SHPVHAGGLG FGFKWNMGFM HDTLQYLARE PVHRKFHHND LTFGLLYAFS ENFVLPLSHD
EVVHGKGSLI AKMAGDDWQK FANLRAYYGF MWGYPGKKLL FMGQEFAQWR EWSEDRALDW
NLLEYNLHEG MRRLVRDLNG TYRSKPALHA RDCEGDGFEW LIADDRQNSV FAWLRKAPGE
KLVAVITNFT PVYREHYDIP LPVAGRWKEI LNTDAEIYGG SGKGNGGAVI AEKRANGETI
ATITLPPLAA LMLEQD
|
|---|
| |