| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2666 |
|---|
| Symbol | |
|---|
| ID | 5323535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2771514 |
|---|
| End bp | 2772659 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791610 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001328331 |
|---|
| Protein GI | 150397864 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0163222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.379262 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAATCC GCTCCCTCCT GAATTCCAGC CGGCCCGTAG CCTTTGCCGC AGCGATGCTT
TCAGCAGTCG CGCCGGCACT GGCACAGCAA CCGATACCGC CAGCGCAGAC CGACGAGGGC
AGTGCGCAGA AGCGCGGGCG GATCACGCCT TTCAACGGCG CGGCACTACC GGAAGATGGC
GAGCGAAAGC CGGCAGCGGC CGGGCCGGAA AAGCCGAAGC CCAGCGATGG CAGTGCGCCT
TCGAAGGGCG TCAACGTGAT CGATCGCATG GGAGCAGAAT TGCCTGATCT TCCTGAGGAG
AAACCCTTCA CAGGCAAGAT CGACGAAGCT TATGGTGCCT TCCAGCGGGG CTATTACCTC
ACGGCGATGG ACCTTGCCTT GCCGCGGGCC CAGCTCGGCG ATCCAGCCGC CCAGACGCTC
GTCGCGGGAA TCCTCGAGCA GGGACTCGGT GTTGCGCGCG ACGCCAAGGC CGCCGCCTTC
TGGTACGGCC AGGCGGCCAC CAATGGCGAT CCGGCGGCCA TGTTCAAATA TGCGCTGATC
CTGATGGAAG GCCGCCACGT CAAGCGCGAC CGGAAGAAAG CAGACGAGCT CATGAAAAAG
GCTGCCGATC TCGGCAATGC CTCGGCTCAG TTCAACTACG GACAAACGCT GGTGGCCGAC
ATGCCCGGCG AGCGCGGCCT GAAGGCCGCC ATGCCCTATT ACGAGAAATC GGCCGAACAA
GGCATTGCGG ACGCGCAATA TGCGCTGTCC CAGATCTACG TCAATGTCGA CGGCGTCGAG
GACGACAAAC GCGCCCGCGC CCGCGAGTGG CTGCTCAGGG CGGCGCGCGC GGGCTATGAT
ACGGCGCAGC TCGACATTGC GATCTGGCTG ATAGAAGGGA TCGCCGGCGA CCGCAACCTC
GAAGAGGGCT TTGCCTGGAT GAAGCGCGCC GCCGAAAGCG GCAACGTCGT CGCCCAGAAC
CGACTCTCCC ACCTCTATGT GAATGCCATA GGTACGCGTC CGGACCCCGT CGAAGCGGCA
AAATGGTACG TCCTGTCGCG CCGGGCCGGC CTCAAAGATG ACGCGCTCGA GGATTTCTAT
CTCGGCCTCA ACGAAACGCA GCAGAAGTCG GCGCTCGCGG CGGCCAACAA ATACCGCTCG
TCCTGA
|
|---|
| Protein sequence | MVIRSLLNSS RPVAFAAAML SAVAPALAQQ PIPPAQTDEG SAQKRGRITP FNGAALPEDG
ERKPAAAGPE KPKPSDGSAP SKGVNVIDRM GAELPDLPEE KPFTGKIDEA YGAFQRGYYL
TAMDLALPRA QLGDPAAQTL VAGILEQGLG VARDAKAAAF WYGQAATNGD PAAMFKYALI
LMEGRHVKRD RKKADELMKK AADLGNASAQ FNYGQTLVAD MPGERGLKAA MPYYEKSAEQ
GIADAQYALS QIYVNVDGVE DDKRARAREW LLRAARAGYD TAQLDIAIWL IEGIAGDRNL
EEGFAWMKRA AESGNVVAQN RLSHLYVNAI GTRPDPVEAA KWYVLSRRAG LKDDALEDFY
LGLNETQQKS ALAAANKYRS S
|
|---|
| |