| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2623 |
|---|
| Symbol | |
|---|
| ID | 5323492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2721994 |
|---|
| End bp | 2723931 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640791567 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_001328288 |
|---|
| Protein GI | 150397821 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCTA ATTTTCGAAA TTTTGCCCTT TGGGCGATCA TAGCGCTTCT CCTGATAGCG
CTGTTCAGCA TGTTCCAGCA GCCGACCGAA CGGGCAGGCT CGCGTGAAAT TCCGTTCTCG
CAATTCCTCA AGGACGTCGA TGCAAGCCGC GTAAAGGACG TGGTGATCAC CGGTTCGAAG
GTGATCGGCA GCTACACCGA AAGCGGAGCG ACCTTCCAGA CCTACGCCCC CGCGGTCGAC
ACGGCACTCA CGGAGCGGCT GGAAGCCAAG GACGTCACGG TCACGGTTCG TCCGGAGACG
GACGGCTCGT CGGGTTTCCT CAGCTATATC GGAACGCTCC TGCCGATGCT CCTGATCCTC
GGCGTCTGGC TGTTCTTCAT GCGCCAGATG CAAGGCGGCT CGCGCGGCGC CATGGGCTTC
GGCAAGTCCA AGGCCAAGCT TCTGACAGAA GCGCATGGCC GCGTAACCTT CGACGACGTC
GCCGGCGTCG ACGAGGCCAA GCAGGACCTT GAGGAGATCG TCGAATTTCT GCGCGATCCG
CAGAAGTTTC AGCGCCTCGG CGGCCGCATC CCGCGCGGCG TTCTGCTGGT CGGCCCCCCC
GGCACGGGTA AGACGCTGCT TGCCCGCTCG GTCGCCGGCG AGGCGAACGT GCCCTTCTTC
ACGATCTCGG GTTCGGACTT CGTCGAAATG TTCGTCGGCG TCGGTGCCTC GCGGGTCCGG
GACATGTTCG AGCAGGCGAA GAAGAACGCG CCCTGCATCA TCTTCATCGA CGAAATCGAC
GCGGTCGGCC GCCATCGCGG CGCCGGGCTT GGCGGCGGAA ACGACGAGCG CGAGCAGACG
CTGAACCAGT TGCTCGTCGA AATGGACGGC TTCGAGGCAA ATGAGGGCAT CATCCTCATT
GCCGCGACCA ACCGGCCGGA CGTGCTCGAC CCCGCGCTGC TGCGTCCGGG CCGCTTCGAC
CGCCAGGTCG TGGTGCCGAA CCCTGACATC AACGGCCGCG AGCGGATCCT CAAGGTGCAC
GTCCGAAACG TGCCGCTGGC GCCGAATGTC GACCTCAAGG TGCTTGCGCG CGGCACCCCG
GGCTTCTCCG GTGCCGATCT CATGAACCTC GTTAACGAGT CGGCGCTCAT GGCAGCGCGG
CGCAACAAGC GCGTCGTTAC CATGCAGGAG TTCGAGGACG CCAAGGACAA GATCATGATG
GGCGCGGAGC GCCGCTCTTC CGCCATGACC GAAGCCGAGA AGAAGCTGAC TGCCTATCAC
GAGGCGGGCC ATGCGATCCT CGCGCTCAAC GTTCCTTCGG CCGATCCGCT GCACAAGGCG
ACGATCATTC CCCGAGGCCG AGCGCTCGGC ATGGTGATGC AGCTGCCCGA AGGCGATCGC
TATTCGATGA GCTACAAGTG GATGATCTCG CGCCTCGCCA TCATGATGGG CGGACGTGTT
GCCGAGGAGC TGACCTTCGG CAAGGAGAAT ATCACTTCAG GCGCCTCCTC CGACATCGAG
CAGGCGACGA AGCTTGCCCG GGCGATGGTC ACGCAGTGGG GCTTCTCCGA CCAGCTCGGA
CAGGTCGCTT ACGGCGAGAA CCAGCAGGAG GTTTTCCTGG GCCATTCGGT TGCCCAGCAG
AAGAACGTTT CCGAGTCGAC TGCCCAGAAG ATCGACAACG AGATTCGGCG TCTGATAGAC
GAGGCCTATG AAACGGCGCG GCGCATCCTT ACCGAGCACC ATCATGAATT CGTGGCGCTC
GCGGAAGGCT TGCTCGAGTA CGAGACACTC ACGGGCGACG AGATCAAGGC TCTGATCCGC
GGCGAGAAGC CGGCGCGCGA TCTTGGCGAC GACACGCCGC CGCATCGCGG CTCGGCCGTT
CCCTCTGCCG GTACCAAGAA AGAAACAGGC AACAAGGGCG AGGAGCCCGA AGGCGGGTTC
GAACCGCAGC CGCAATAG
|
|---|
| Protein sequence | MNPNFRNFAL WAIIALLLIA LFSMFQQPTE RAGSREIPFS QFLKDVDASR VKDVVITGSK
VIGSYTESGA TFQTYAPAVD TALTERLEAK DVTVTVRPET DGSSGFLSYI GTLLPMLLIL
GVWLFFMRQM QGGSRGAMGF GKSKAKLLTE AHGRVTFDDV AGVDEAKQDL EEIVEFLRDP
QKFQRLGGRI PRGVLLVGPP GTGKTLLARS VAGEANVPFF TISGSDFVEM FVGVGASRVR
DMFEQAKKNA PCIIFIDEID AVGRHRGAGL GGGNDEREQT LNQLLVEMDG FEANEGIILI
AATNRPDVLD PALLRPGRFD RQVVVPNPDI NGRERILKVH VRNVPLAPNV DLKVLARGTP
GFSGADLMNL VNESALMAAR RNKRVVTMQE FEDAKDKIMM GAERRSSAMT EAEKKLTAYH
EAGHAILALN VPSADPLHKA TIIPRGRALG MVMQLPEGDR YSMSYKWMIS RLAIMMGGRV
AEELTFGKEN ITSGASSDIE QATKLARAMV TQWGFSDQLG QVAYGENQQE VFLGHSVAQQ
KNVSESTAQK IDNEIRRLID EAYETARRIL TEHHHEFVAL AEGLLEYETL TGDEIKALIR
GEKPARDLGD DTPPHRGSAV PSAGTKKETG NKGEEPEGGF EPQPQ
|
|---|
| |