Gene Smed_2620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2620 
Symbol 
ID5323489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2718145 
End bp2718942 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content63% 
IMG OID640791564 
Productputative heat resistant agglutinin 1 signal peptide protein 
Protein accessionYP_001328285 
Protein GI150397818 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3637] Opacity protein and related surface antigens 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.875915 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTGGC GACGGGGACT TTGCAGTGTG GCGTTCTGCG CCGGCCTTTC GGCGCCCTTC 
TTCGCACAGG CCGCCGATGA AGATTTTCTG GACGCGCCCG AAATCACGAT CTCGTCAGAA
GAAGCCGCCG GTGGCGGCCT GTATCTGCGT GGCGACATAG GCTATGCGGC CTGGCTGGAC
GAAGGAGATC CCTACTATCG TTCCCCCGGC TCGGGCAATG TGGCCTTCGA CAATGCACGT
TTCGAAGAGC CGGCCTCCGC CACGATCGGC CTGGGGTATC AGTTCACCGA TGTAATTCGT
GCCGACCTTA CGGCCGAATA TTTCGAGGGC CGCTTCGACG GGACCTCGCT CTCCGCCCCC
CCCTGCGCGG GAGAGGGTGC GGGGACAGGG TGCGCCTTTT CCCATCGCGC CAATTTTTCC
GCGCTCGGAC TAATGGCAAA CGGCTATGTC GATCTGGCGA CGCTTGCCGG TTTCACGCCC
TATCTCGGTG CCGGTATCGG AGCGACCCGG ATCGACTGGA AAACGGCTCA TGAGACATCG
TCTTGCGTCG GGCCAGGCGG TGCATGCTCC GGTAACGCCG GCGGCGCTTC CTACGGCGGA
CGGGACAGCT GGCGCTTTAC CTATGCCCTC ATGGCGGGCG TCTCCTATGA CGTCACGGAC
CGGCTGAAGT TCGATGCCGG CTATCGCTAT TCGCAAATCT CGGACGGTGA CATGTTCGGC
TCCGGGGACG CGCAGGGCTA CGACGATGGG CTCTCGCGCC ATGAATTCCG CGTTGGACTG
CGTTTCGCGC TTTGGTAA
 
Protein sequence
MDWRRGLCSV AFCAGLSAPF FAQAADEDFL DAPEITISSE EAAGGGLYLR GDIGYAAWLD 
EGDPYYRSPG SGNVAFDNAR FEEPASATIG LGYQFTDVIR ADLTAEYFEG RFDGTSLSAP
PCAGEGAGTG CAFSHRANFS ALGLMANGYV DLATLAGFTP YLGAGIGATR IDWKTAHETS
SCVGPGGACS GNAGGASYGG RDSWRFTYAL MAGVSYDVTD RLKFDAGYRY SQISDGDMFG
SGDAQGYDDG LSRHEFRVGL RFALW