| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2578 |
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| Symbol | |
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| ID | 5323446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2674641 |
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| End bp | 2677697 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640791521 |
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| Product | hypothetical protein |
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| Protein accession | YP_001328243 |
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| Protein GI | 150397776 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases
[COG2334] Putative homoserine kinase type II (protein kinase fold) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.54149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.14969 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA TGCTGAAGAC GACACCCGAT TTCACGATCG AAGAGGCGCA AGCACTCCTT
GCGCAGCATT TCGGACTGAA CGCGGCGCTC ACGCCGCTCG ACAGCGAGCG GGACCAGAAC
TTCAAAGTCA GCGCCGGCGA CGGCCGCAGC TATATCCTGA AGATCATCAA TGCGGCCGAG
CCCGAAATCG AAAGCGATTT TCAGACGGCC CTTCTGGCGC ATCTCGGCGC CAGGGCCGAC
ACTCTTCCGG TGCCGCATCT GCAGCCTGCC TTATCCGGCG AAAGCCTGGC TACGACGAGC
GCCAGGAGCG GCCTCGTTCA CCGGTTGCGC CTGGTCAGCT GGATCGAGGG CATGCCGCTT
GCCCAGTCCG AAAGGACCGA CGCGGCGCTT CGGTCCCTCG GCCACATGCT CGGCCGCTTC
GACGCCTCGC TCAAGGGCTT CATGCATCCT GGCGCACTTC GCGATCTCGA CTGGGACATC
CGCAATGCCG GACGCTCTGC CGGGCGGCTC CTGCATGTCG CCGATCCCCA GGATCGTGCT
CTTCTTCAAC GCTTTATCGA TCGGTTCGAA GAGCGCATCG CCCCGCGGCT GCCGATGCTG
CGTTCGGCCG TCATCCATAA CGACGCGAAC GACTGGAACG TGCTCGTCGG TGAGGACGAT
CGCAACCGCA TCTCCGGCAT CATTGACTTC GGCGATGCCC TCTATACGCC CGTCATGGCT
GAAGTCGCCA TCGCGGCCGC CTATGCCGGG CTCGATCATC CCGATCCGAT CGGCGCGGCC
GCTGCGATCG CCAATGGTTA TCACGCCGAA TACCCACTCC TCGAAGAGGA AGTCGACCTC
CTCTTCGACC TGATCGCCAT GCGACTGGTG ACCTCGGTGA CGATCTCCGC CTCGCGTCGG
GCGCATACCG GTGGCAACCC TTACCTCGCG ATCAGCGAAA GGCCGGCCTG GGCGCTCCTG
CGCAAGCTCG ATGCGATGAA CCCGCGCTTC GCGACGGCAA TCCTGAGAAA GGCCTGCGGT
TTCGAGGCTG TCGCCGGCGC CCGCGCCGTC GGCGCCTGGA TCGACCGCAA CCGCAAGAAC
CTGCTGGCGC TTCTCGACCG TCCAGCCGCA GCCTATGCCG CCGACATTGT CCCCTATGGC
GACCCTGCGC ATTCGATGAC CGTAAATTCG GCAGCGGCGC GGCCGCATGA GGCGCAATCG
GTTTGGACGG AGCATTGCCG TGGTACCGGT GTCGAGCTCG GCATCGGTCC CTGGGGTGAG
GCCCGCACCG TCTATTCGGG CGAAATGTTC GTCTCGCGCC TGCTCGAGAA GACCCGCCGC
TCGCGCCATC TCGGCCTCGA CCTCTTCAAG GCTGCAGGCA CGAAGGTCTA TACGCCGCTC
GCGGCGACGG TCGCGAGTGT CGAGATCGAG ACGGATCCGC TCGGCTATGG CTGCCTTGTC
GCGCTGCGCC ATGAACCGGA GGGTTGCCCG CCCTTCCTGA CGCTCTGGGG ACATCTTGCC
CATGAAGCTG TCGGTCGGCT GAAGGCCGGC GACACGCTGG AGGCCGGCGC GCTCGTCGGC
GAAATGGGCG CTCCGGAGGA AAACGGCGGC TGGGCGCCGC ATCTGCATCT GCAGATCTGC
ACGGACACGG GCCTTTCGGC GTCGGAAATC CTGGGCGTGG GCGAGGAACG CTATCTCGAC
GTCTGGTCAG AACTTTTCCC CGACGCAAGC GCATTTGCCG GTGTTGCTCC GGAATTCTAC
GAGCAGACCG GCCGCACCCA TGAGGAAATC GTCAGGCTTC GAAAGGACCT GCTGCTCTCG
AACCTGTCGA TCTCCTACGA AAAGCCGATA AAGTTCGTGC GCGGCGAAGG CGTCTGGCTC
ATCGACGATC GCGGTCGCGC CTATCTCGAC TGCTTCAACA ATGTCTGCCA CATCGGTCAC
GCCCATCCGG CCGTGGTGGA AGCGATCGCG CGCCAGGCCG CAACGCTCAA TACCAACACG
CGCTACCTCC ACGATAATAT CGTCGCCTAT GCCGAGCGGC TGACGTCGAC GTTGCCGAAG
GAACTCGCGA TTGCCGCCTT CGCCAATAGC GGCTCCGAAG CCAACAGCCT CGCCCTGCGC
CTGATGCGTG CGCACACGGG CCGCGAAAAC GCTCTCGTGC TCGACTGGGC CTATCACGGC
ACGACGCAGG AACTGATCGA TCTCAGCGCT TACAAATTTC GCCGCAAGGG CGGAAGGGGT
CCAAAATCGC ATGTGCACGT GGCAGCCGTC CCGGACAGTT ATCACGCCCC CGCCGATTGG
CCGGCCGAGG AGCATGGCAA ACGCTTTGCA GAAGACATCG CCGAACTGAT CGCGGCCATG
CGTGCCAGAG GCGAAGCGCC CGGCTTTTTC CTCGCCGAGT CCATTCCCAG CGTCGCAGGC
CAGGTGTTTC TGCCGGACGG GTACCTCAAG GAGGTCTACC GCATGGTTCG GGACGCCGGG
GGCGTCTGCA TCGCGGATGA GGTACAGGTC GGTTTCGGCC GGGTCGGCAG CCATTGGTGG
GCCTTCGAAA CGCAAGGCGT CGTCCCCGAC GTCGTCACAA TGGGCAAGCC GATCGGCGCG
GGTCATCCGC TCGCCGCCGT GGTCACCACG CGTGAGATCG CGGCCTCGTT CGACAACGGC
ATGGAATATT TCAACACCTT CGGCGGCAAT CCCGTGTCCT GCGCCGCCGG CCTCGCCGTG
CTCGACGTCA TCGAAGGCGA AGACTTGCGC CGCAACGCCC TTGAGATCGG CAATTATCTC
CTTGCCGCCT TCCGCTCGAT GCAGGAGCGC TATGAGGTCA TCGGCGACAT CAGGGGTCTC
GGCCTCTTTC TCGGCATAGA GCTCGTCAGC GACCGAAGCA CCAAGGCGCC GGCGACGGAG
ATCGCCCGGG CCGTCTCGAA CGGAGCACGG CAGCGCGGCG TCCTGATGGG CACGGAGGGA
CCGCATGACA ATGTCCTGAA GATGCGTCCG CCCATGATCT TTTCGAAGCG CGATGCCGAT
CACCTGATCG CCGTGCTCGC GGAGACATTC GAGGCCGTGC TCGCGCGAGC CGGATAG
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| Protein sequence | MNDMLKTTPD FTIEEAQALL AQHFGLNAAL TPLDSERDQN FKVSAGDGRS YILKIINAAE
PEIESDFQTA LLAHLGARAD TLPVPHLQPA LSGESLATTS ARSGLVHRLR LVSWIEGMPL
AQSERTDAAL RSLGHMLGRF DASLKGFMHP GALRDLDWDI RNAGRSAGRL LHVADPQDRA
LLQRFIDRFE ERIAPRLPML RSAVIHNDAN DWNVLVGEDD RNRISGIIDF GDALYTPVMA
EVAIAAAYAG LDHPDPIGAA AAIANGYHAE YPLLEEEVDL LFDLIAMRLV TSVTISASRR
AHTGGNPYLA ISERPAWALL RKLDAMNPRF ATAILRKACG FEAVAGARAV GAWIDRNRKN
LLALLDRPAA AYAADIVPYG DPAHSMTVNS AAARPHEAQS VWTEHCRGTG VELGIGPWGE
ARTVYSGEMF VSRLLEKTRR SRHLGLDLFK AAGTKVYTPL AATVASVEIE TDPLGYGCLV
ALRHEPEGCP PFLTLWGHLA HEAVGRLKAG DTLEAGALVG EMGAPEENGG WAPHLHLQIC
TDTGLSASEI LGVGEERYLD VWSELFPDAS AFAGVAPEFY EQTGRTHEEI VRLRKDLLLS
NLSISYEKPI KFVRGEGVWL IDDRGRAYLD CFNNVCHIGH AHPAVVEAIA RQAATLNTNT
RYLHDNIVAY AERLTSTLPK ELAIAAFANS GSEANSLALR LMRAHTGREN ALVLDWAYHG
TTQELIDLSA YKFRRKGGRG PKSHVHVAAV PDSYHAPADW PAEEHGKRFA EDIAELIAAM
RARGEAPGFF LAESIPSVAG QVFLPDGYLK EVYRMVRDAG GVCIADEVQV GFGRVGSHWW
AFETQGVVPD VVTMGKPIGA GHPLAAVVTT REIAASFDNG MEYFNTFGGN PVSCAAGLAV
LDVIEGEDLR RNALEIGNYL LAAFRSMQER YEVIGDIRGL GLFLGIELVS DRSTKAPATE
IARAVSNGAR QRGVLMGTEG PHDNVLKMRP PMIFSKRDAD HLIAVLAETF EAVLARAG
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