| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2564 |
|---|
| Symbol | aroB |
|---|
| ID | 5323432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2661507 |
|---|
| End bp | 2662649 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791507 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001328229 |
|---|
| Protein GI | 150397762 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.443147 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCA TGACCAGCGA TGTGATGCCA GCCGCCGAGC GTAAGGTCCG CGTCGATCTT
GCGGAGCGTT CCTACGATAT CCTCATCGGC CCCGGCCTGA TCGCCGCCGC GGGCGGGGAG
ATCGCCTCGC GGCTCAAGGG CCGGAAGATG GCGGTCATCA CCGACGAGAA TGTTGCGCCG
CGCTATCTCG AACCGTTGAT GGCGAGCCTT GCGGGAAGCG GCATGGATCC GGTCTCCCTG
ATTCTGCCGG CGGGTGAGAA GACCAAGAGC TTCGAGCACC TGATCCCGGT TTGCGAAGCG
GTCCTGGGTG CCAGAATAGA GCGTAACGAC GCGGTGATCG CGCTCGGTGG CGGCGTGATC
GGCGATCTCA CCGGCTTCGC CGCTGGTATC GTCCGCCGCG GCTCTCGCTT CATCCAGATC
CCGACATCGC TGCTGGCGCA GGTCGATTCC TCCGTCGGCG GCAAGACCGG CATCAATTCG
CCGCACGGCA AAAACCTGAT CGGCGTTTTC CACCAGCCGG ACCTCGTTCT CGCCGACACC
GCCGCGCTCG ACACGCTCAG CCCGCGCGAA TTCCGTGCAG GCTATGCCGA GGTCGTGAAA
TACGGCCTGA TCGACAAGCC GGATTTCTTC GAATGGCTTG AGCAGAACTG GCAGGCCGTG
TTTGCCGGCG GACCCGCCCG GATCGAGGCG ATCGCCGTCA GCTGCCAGGC GAAAGCCGAC
GTCGTCGCCG CGGATGAGCG CGAAAACGGG CTGCGTGCGC TGCTCAATCT CGGCCACACC
TTCGGTCATG CCCTGGAAGC CGCCACCGGA TACGACAGCA AACGGCTGGT GCACGGGGAG
GGCGTTGCGA TCGGTATGGT TCTGGCGCAC GAGTTCTCGG CCCGGATGAA CATTGCGAGT
CCCGACGATG CGCGGCGCGT GGAAATGCAT CTGAAGACGG TCGGCCTCCC GACACGCATG
GCCGACATTC CCGGTATGTT GCCGCCCGCC GATCGACTGC TGGAGGCGAT CGCCCAGGAC
AAGAAGGTAA AGGGAGGCAA GTTCACCTTC ATTCTCACCA GGGGCATCGG ACAGTCCTTC
ATCGCGGATG ACGTGCCCTC CTCGGAGGTC CTAAGCTTTC TTGAGGAAAG GATCCCGCGA
TGA
|
|---|
| Protein sequence | MKPMTSDVMP AAERKVRVDL AERSYDILIG PGLIAAAGGE IASRLKGRKM AVITDENVAP
RYLEPLMASL AGSGMDPVSL ILPAGEKTKS FEHLIPVCEA VLGARIERND AVIALGGGVI
GDLTGFAAGI VRRGSRFIQI PTSLLAQVDS SVGGKTGINS PHGKNLIGVF HQPDLVLADT
AALDTLSPRE FRAGYAEVVK YGLIDKPDFF EWLEQNWQAV FAGGPARIEA IAVSCQAKAD
VVAADERENG LRALLNLGHT FGHALEAATG YDSKRLVHGE GVAIGMVLAH EFSARMNIAS
PDDARRVEMH LKTVGLPTRM ADIPGMLPPA DRLLEAIAQD KKVKGGKFTF ILTRGIGQSF
IADDVPSSEV LSFLEERIPR
|
|---|
| |