Gene Smed_2517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2517 
Symbol 
ID5323384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2612691 
End bp2613545 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content59% 
IMG OID640791459 
ProductPpiC-type peptidyl-prolyl cis-trans isomerase 
Protein accessionYP_001328182 
Protein GI150397715 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.657147 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAGAT ACAAGACCCT TGCGGCCGCG GCCCTGGTCG CGATGATTGC AGCGGGCGTC 
GCCCGCGCCG AAGGGACCGA CCCGGTCATT GCGAAAGTCG GGGACCAGGA AATCCGCCAG
TCGGAACTTG ATCTCGCAGT CACGAGCCTC GATCCGCAAC TTCAGCGGAT GCCCGACGAG
CAGAAGCGCG CCGCAGCGCT TTCGGCCGTT ATCGACGTCA AGCTGCTTTT GAAGGACGCC
GAAAAGGAAG GCCTTCAGAA CGACGAGACG TTCAAGCAGC GCATTGCCTT CCTGACGGAA
CGGGAATTGC ACAACGCCTA TTTCAAAAAG CATGTGATCG ATGCCGTGAC GCCTGAAGAA
GTGAAGGCGC GCTATGACAA GGAAATTGCA GCCATTCCTC CGCAGGAAGA GGTGAAGGCC
CGGCATATCC TCGTCAAGAC AGAGGACGAG GCGAAGGCAG TGATCAAGGA ACTGGACGCC
GGCAAGAACT TTGCGGAGCT TGCCAAGGCG AAGTCCACCG ATCCGAACAA GGACGAGGGC
GGCGACCTCG GATATTTCAC CAAGGGCCGC ATGGTGCCGG AATTCGAAAC GGCAGCTTTC
GCTCTGGAAA AGGGCGCCTA CACGAAGACA CCGGTCAAGA CGCAGTTCGG CTTCCACGTC
ATCCTCGTCG AGGACAAGCG TCCCCAGGCG CCGCCGACGC TGGAGCAGGT CGAGCCCCAG
GTTCGCCAGC TCGTCATGCG CGACAGGTAT CTCGAGCTTC TGAATTCAGC GAAGGAGAGC
ACTGCAGTCG AAATCTCCGA CCCGGCTCTC AAGAAGGCCT ATGACGAGGC CGGCAAACCG
CAGAAAAGCA AGTAA
 
Protein sequence
MLRYKTLAAA ALVAMIAAGV ARAEGTDPVI AKVGDQEIRQ SELDLAVTSL DPQLQRMPDE 
QKRAAALSAV IDVKLLLKDA EKEGLQNDET FKQRIAFLTE RELHNAYFKK HVIDAVTPEE
VKARYDKEIA AIPPQEEVKA RHILVKTEDE AKAVIKELDA GKNFAELAKA KSTDPNKDEG
GDLGYFTKGR MVPEFETAAF ALEKGAYTKT PVKTQFGFHV ILVEDKRPQA PPTLEQVEPQ
VRQLVMRDRY LELLNSAKES TAVEISDPAL KKAYDEAGKP QKSK