Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2484 |
Symbol | |
ID | 5323345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2568133 |
End bp | 2568849 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640791422 |
Product | GntR domain-containing protein |
Protein accession | YP_001328151 |
Protein GI | 150397684 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.120596 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAACGG ATTTCGGACA GATCAGCAGG AGCGAGCACT TGCCTGCGCG CATCGCGGCC AAGATCGGCA GGGAGATCAC CGAAGGACGT ATCGCGCCCG GAGAGAAACT GCCGACCGAA AATCTGCTCG CCACGACCTT CGGGGTCAGC CGTTCGGTGG TGCGGGAGGC GATAGCGCAA TTGCGCAATG AAGGGCTGGT GGAAACCCGC CAGGGCGTCG GCGCCTTCGC TACGGAAATC GAGCGCCGGC AATCTCTTCG GATAGAGCAG GGAGACCTTG CCAACCGGGG AAGTTTCCGT GATCTCTTTC AGCTTCGTAT CCCGCTGGAA GTGGAGGCGG CGCGGCTTGC GGCGATCCAT CATACACCGG AGGAATTGGG CAGGATCGAC GAGGCTTTGC TGCAGATGAC CGGCACGGAT AAATGGACGG GCCAGGGGAT CGTCGCCGAC CTCGCTTTTC ACCGCGCGAT CGCGGCCGCA ACCCACAACG ACTATTTCCT GCTATTCATA GGTTTCATCG CCGAGCGGAT CAGCCTGGCG ATCAATGCGG CACGCGCCGC TGCGATACTG GAGGAGATCG TTGAAGTCAC GATCGCGGAA CACGTGTCCA TTCGAGATGG CGTGGCGGCG CGGGACCCGA TCAAAGCGGG GGAAGCAATG CGCCATCATC TGAACGGGGC GGCGGCCCGT CTGGACCTGA CGATCGAAAG CTTCTAG
|
Protein sequence | MATDFGQISR SEHLPARIAA KIGREITEGR IAPGEKLPTE NLLATTFGVS RSVVREAIAQ LRNEGLVETR QGVGAFATEI ERRQSLRIEQ GDLANRGSFR DLFQLRIPLE VEAARLAAIH HTPEELGRID EALLQMTGTD KWTGQGIVAD LAFHRAIAAA THNDYFLLFI GFIAERISLA INAARAAAIL EEIVEVTIAE HVSIRDGVAA RDPIKAGEAM RHHLNGAAAR LDLTIESF
|
| |