Gene Smed_2481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2481 
Symbol 
ID5323342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2564962 
End bp2566239 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content60% 
IMG OID640791419 
ProductTRAP dicarboxylate transporter, DctM subunit 
Protein accessionYP_001328148 
Protein GI150397681 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1593] TRAP-type C4-dicarboxylate transport system, large permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTTG TCGTCTTCAT CGTTTCGCTA CTCGGTGCCA TGGCAATCGG CGTGCCGGTC 
GCCTTCTCCC TGATGTTCTG CGGCGTCATA CTCATGTGGT ACATGGGTAT GTTCAACACC
CAGATCATTG CTCAAAACAT GATCGCGGGT GCCGATACCT TCACGCTCCT CGCCATTCCG
TTCTTCATTC TCGCCGGTGA ATTGATGAAC GCGGGCGGGC TTTCGCGCCG CATCATCGAC
TTCGCAATCG CCTGTGTCGG TCATATTCGC GGCGGCCTCG GCATCGTTGC CATCATGGCG
GCTGTGATCA TGGCGAGCAT CTCCGGTTCG GCGGCAGCCG ACACCGCGGC ACTTGCCGCG
ATCCTCATAC CGATGATGGC GAAGGCCGGC TACAACGTCC CCCGATCTGC CGGCCTGATC
GCCGCAGGTG GCGTTATCGC CCCCGTCATC CCGCCATCCA TGGCCTTCAT CGTGTTCGGG
GTGGCGGCGA ACGTTTCCAT TACCCAGCTC TTCATGGCAG GCATCGTGCC CGGCCTCCTC
ATGGGTCTTG CCCTTGTCGC AACCTGGCTG CTGGTCGTGC GGAAGGATGA TATCCAGCCA
CTTCCACGTA CGCCTTTGAA AGAGCGTCTC CGCGTCACCG GGCGGGCGCT TTGGGCCCTC
GGTATGCCGG TCATCATCCT GGGCGGCATC AAGGCCGGCG TCGTGACGCC GACCGAGGCC
GCCGTGGTAG CCGCATTCTA TGCCCTCTTC GTCGGCATGG TCATTTATCG CGAGCTCAAG
CCACGTGACC TGCCAGGCGT CATCCTGCAG GCCGCGAAGA CCACCGCTGT CATCATGTTC
CTCGTCTGCG CTGCGCTCGT TTCCTCGTGG CTGATAACCG CGGCGAACAT TCCAGCGGAA
ATCACCGGAT TCATCTCTCC GCTGATCGAC CGCCCGACGC TTCTGATGTT CGTCATCATG
CTGGTCGTAT TGGTTGTTGG CACCGCATTG GACCTTACCC CCACGATCCT GATCCTGACA
CCGGTGCTCA TGCCGATTAT CAAGCAGGCT GGAATCGATC CTGTCTATTT CGGCGTTCTA
TTCATCATGA ATACCTGCAT AGGGCTGCTG ACCCCGCCTG TCGGCGTCGT TTTGAACGTC
GTCAGCGGCG TCGGCCGGGT TCCGCTCGGA AAGGTCATTG TCGGCGTGAC CCCATTCCTG
GTCGCCCAGA TACTGGTGCT TTTCCTTCTG GTCCTTTTTC CGGACATCGT CATCGTGCCC
GCACGCTGGC TCAACTGA
 
Protein sequence
MTLVVFIVSL LGAMAIGVPV AFSLMFCGVI LMWYMGMFNT QIIAQNMIAG ADTFTLLAIP 
FFILAGELMN AGGLSRRIID FAIACVGHIR GGLGIVAIMA AVIMASISGS AAADTAALAA
ILIPMMAKAG YNVPRSAGLI AAGGVIAPVI PPSMAFIVFG VAANVSITQL FMAGIVPGLL
MGLALVATWL LVVRKDDIQP LPRTPLKERL RVTGRALWAL GMPVIILGGI KAGVVTPTEA
AVVAAFYALF VGMVIYRELK PRDLPGVILQ AAKTTAVIMF LVCAALVSSW LITAANIPAE
ITGFISPLID RPTLLMFVIM LVVLVVGTAL DLTPTILILT PVLMPIIKQA GIDPVYFGVL
FIMNTCIGLL TPPVGVVLNV VSGVGRVPLG KVIVGVTPFL VAQILVLFLL VLFPDIVIVP
ARWLN