Gene Smed_2476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2476 
Symbol 
ID5323337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2558462 
End bp2559181 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content64% 
IMG OID640791414 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001328143 
Protein GI150397676 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTATCTCG AACGCTTCAA GCTTGACGGC GAACTGGCAG TCGTCACCGG AGGAGGGCGC 
GGCATCGGAC TTGCAAGCGC CGATGCGCTC GGCGAAGCCG GTGCGCGTCT TGCCCTTATC
GAGCGCGATC CGGACCTCCT CGAGGAGGCA CGCGCCGTCC TTCAGGACAA GGGCTACGAC
GTCTCGGTGC ACGAGGGCGA CGTTACCGAC GCCGCGCGGA TGCAGGCAAT TGCGGACGAA
CTGGCGGCGA AAGGCGGCGC CTCCATCCTC GTCAACAATG CCGGCATCGC GCTCAGTGAT
ATCCCTGCCG AGAACATGGA GGACGAACGC TGGCTCAAGG TCATCGACGT CAACCTGAAC
GGGGTCTACT GGTGCAGCCG TGCTTTCGGC CGGCACATGC TGTCGATGGG CCGAGGCTCC
ATCGTCAATG TCGGCTCCAT GTCCGGTTTC ATCGTCAATC GGCCGCAGCC GCAGGCTCAT
TACAACGCCT CGAAGGCAGC GGTCCATCAA CTGACCCGCT CGCTCGCCGC TGAATGGGCG
TCGCGCGGCG TACGGGTCAA CGCGGTCGCG CCCACCTACA TCGAAACACC GCTCAACGCG
CTGGTCGAGA ACGACAGGCC GATGCTCGAC CGCTGGCTCG ATTCAACGCC GATGGCGCGC
ATGGGCAAGG ACCACGAGGT CGCAAGCGTG ATCCTCTTCC TGTCCTCTCA GGCGGCATGA
 
Protein sequence
MYLERFKLDG ELAVVTGGGR GIGLASADAL GEAGARLALI ERDPDLLEEA RAVLQDKGYD 
VSVHEGDVTD AARMQAIADE LAAKGGASIL VNNAGIALSD IPAENMEDER WLKVIDVNLN
GVYWCSRAFG RHMLSMGRGS IVNVGSMSGF IVNRPQPQAH YNASKAAVHQ LTRSLAAEWA
SRGVRVNAVA PTYIETPLNA LVENDRPMLD RWLDSTPMAR MGKDHEVASV ILFLSSQAA