Gene Smed_2474 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2474 
Symbol 
ID5323335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2555800 
End bp2557341 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content63% 
IMG OID640791412 
ProductABC transporter related 
Protein accessionYP_001328141 
Protein GI150397674 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0599981 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCGGT TTTCCGGTGC ATTCTCTGGA ACCCCAATGA CCGAACTTGT CAGCCTATCC 
GGTATCCGGA AGAATTATGC CGGCGTCCAA GCCCTGAAGG GCGTGGACTT CGATCTGAAG
GCCGGCGAAG TGCATGCGCT GATCGGAGAA AATGGCGCGG GCAAATCCAC GCTGATGCGC
GTGCTCGGCG GCGAGACGGC ACCGACCTCC GGCACGGTCA GGCTCTACGG CAGGACAGTG
CAGTTCTCCG GTCCGCGGGA TGCGACGCGC CGAGGCATTT CGCTGATCCA TCAGGAACTG
GCTTTGGCGC CCGATCTGAC GGTTGCCGAG AATATCTTTC TGGGGCGTCT GCCGCGCATC
ATCAACCACC GCCGGCTGCG CAAGGCGGCG AGCGAAATCC TCGGCCGTCT CGGCTTCGCG
ATCGACCCCG CCATTCAGGC CGGGCGGCTT ACGGTCGCCC ACCAGCAAGT CGTCGAGATC
GCCAAGGCGC TTTCCAACAA CGCGCGCATC ATCGTCTTCG ACGAGCCGAC TGCGGTTCTT
GCAAACAGCG ATGCCGAGCG GCTGCTTGCC ATCATCCGCG AACTGCGGGC GGGCGGCACC
GGCGTGGTCT ACATTTCTCA CCGCCTCAAC GAGGTCTTCG AGCTTTCCGA CCGCATCACG
ATCATGAAGG ACGGCGCGCA TGTCGAAACG CGGCAAACTT CCGCCGCCGA TGTCGACGAG
GTGATAGCAA GCATGGTCGG ACGCCGTATG TCGACGCTCT TTCCGCCCAG GGACGGCCGC
GCGCCGGGCA GGGTAGTCGT AGAGGTTCGC AACATATCGC GCGGTCAGAA AGTCCGCGAC
GTCAGTTTCT CGGTCCGCGC GGGGGAAGTC GTCGGTCTCG GCGGACTTGT CTGCTCGGGC
CGCACGGAAG TCGCCCGTCT CGTTTTCGGC GCCGACAGAA TGGATGCCGG CACGGTGGAG
CTGAACGGCA AGCCGCTCCA CCTTTCCTCT CCGCGCAAGG CCGTTCGGGC GCGCATCGGC
CTCGTTCCGG AAGATCGTAA GGAACATGGC GTCATTCTCG ACTCGCCGAT CCGTATCAAC
ACGACGCTCG CCAAGATGCG AAGCGTGGCC CGCTTCGGCT TCCTCGACGT GGACAAGGAG
CGGCGGGTCG CCGCCTCACT CGGGGCGGAA ATGCACCTCA AGGCGGAAAG CGTCGATGCG
GCGGTCTCGA GTCTGTCGGG CGGCAACCAG CAGAAGGTCG CCCTTGCCAA ATGGTTCCAC
GCCGATTGCG ACCTGCTCAT TCTTGATGAG CCGACGCGCG GTGTCGATGT GGGAGCGAAA
GGCGAAATCT ATACTTTGAT CAACGATCTG GCTAGGGCCG GAAAGGCGGT CCTCGTCATT
TCGTCCGAAC ATCAGGAACT GTTCGGATTG TGCGACCGCA TTCTCGTCAT GGCGGAGGGG
GCGGTTGCTG GCGAACTCAC CGAAAGCGAG TTCACGGAGC AGCACTTGCT GACGCTGGCG
ATGACCGGGT CGACCAGGGA AAGGGATAAC GCAAGCCAAT GA
 
Protein sequence
MHRFSGAFSG TPMTELVSLS GIRKNYAGVQ ALKGVDFDLK AGEVHALIGE NGAGKSTLMR 
VLGGETAPTS GTVRLYGRTV QFSGPRDATR RGISLIHQEL ALAPDLTVAE NIFLGRLPRI
INHRRLRKAA SEILGRLGFA IDPAIQAGRL TVAHQQVVEI AKALSNNARI IVFDEPTAVL
ANSDAERLLA IIRELRAGGT GVVYISHRLN EVFELSDRIT IMKDGAHVET RQTSAADVDE
VIASMVGRRM STLFPPRDGR APGRVVVEVR NISRGQKVRD VSFSVRAGEV VGLGGLVCSG
RTEVARLVFG ADRMDAGTVE LNGKPLHLSS PRKAVRARIG LVPEDRKEHG VILDSPIRIN
TTLAKMRSVA RFGFLDVDKE RRVAASLGAE MHLKAESVDA AVSSLSGGNQ QKVALAKWFH
ADCDLLILDE PTRGVDVGAK GEIYTLINDL ARAGKAVLVI SSEHQELFGL CDRILVMAEG
AVAGELTESE FTEQHLLTLA MTGSTRERDN ASQ