Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2472 |
Symbol | |
ID | 5323333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 2553948 |
End bp | 2554706 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640791410 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001328139 |
Protein GI | 150397672 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.117337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAGA TCATCGATAC GTTTCGTCCA GACCTGTTTG CCGGCAGGGA TATTCTGATT ACCGGCGGTT CGTCCGGCAT CGGCCTTGCC ATCGCGCAGG GTTTTGCCCG GCTCGGCGGC ACGGTCATCG CGCTGGGCAG CTCTGAATCC AAGCTCAAGG CCGCCGCGGC CGATCCGGAA AACAAGGGCA TCCGCTTCGA GCGCGTCGAC GTGCGCGATC CGGAAATGAT CAACGCATTC GCCAAGACTC TCGGCAAGCT CGACGTTCTC ATCAACGGCG CAGGCATCGC CCGGCCCGAG GCGGAATTCG AGGACGCGAC CTACATGGAG GTGATGGACG TCAACCTGAA CAGCCAGATG CGCTTCGCCA TGGCCGTCCT GCCGCTCCTG AAAGCCTCGC GCGGCGTCAT CCTCAACACC GCCTCCATGC TGAGCTATGT CAGCGATCCG CTCGTGCCGG CCTATGGCGC CAGCAAATCG GGCGTGCTCG GCCTCACTCG CCATCTCGCC CACGCCTTCG GCCCGGATGG CATCCGCGTC AACGCCATCT CTCCCGGCTA TCACAAGACG GACATGACCA GGGGTCTGTG GACCGACCCG GTGCCGGCCG AGAAAATCGC CCAGCGTTCA GCGCTCAAGC GCTGGGGTAC GGTGGATGAC CTTGTTGGAA CCGCGCTCTT CCTGGCCTCG CCGGCCGCGG AATTCATTAC CGGCGCCGAC CTGCCGGTCG ATGGCGGTTT CGTGGTCGGC AGCTTCTGA
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Protein sequence | MKEIIDTFRP DLFAGRDILI TGGSSGIGLA IAQGFARLGG TVIALGSSES KLKAAAADPE NKGIRFERVD VRDPEMINAF AKTLGKLDVL INGAGIARPE AEFEDATYME VMDVNLNSQM RFAMAVLPLL KASRGVILNT ASMLSYVSDP LVPAYGASKS GVLGLTRHLA HAFGPDGIRV NAISPGYHKT DMTRGLWTDP VPAEKIAQRS ALKRWGTVDD LVGTALFLAS PAAEFITGAD LPVDGGFVVG SF
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