| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2430 |
|---|
| Symbol | |
|---|
| ID | 5323291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2507844 |
|---|
| End bp | 2510405 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640791368 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001328097 |
|---|
| Protein GI | 150397630 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGT TTCCGGAAAA GGCGAAGGTC GTAATCGTAG GACTGGGCGG CATCGTCGGC
GCATCGATCG CCCACCACCT CATCGAGCGT GGCTGGGACG ATATCGTCGG CATCGACAAG
TCGGGCATCC CGACCGATAT CGGTTCGACG GCCCATGCCT CGGACTTCTG TTATACGACG
AGCCACGACT ATCTTTCGGT CTGGACGACG CAATACTCGA TCGACTTTTT CGACAGGATG
GGCCACTACT CCCGCATCGG CGGCCTGGAA GTCGCACGCA CCGGCGACGA CGTCTGGATG
GAAGAGATCA AGCGCAAGCT TTCCTCCGCC AAGGCTTTCG GCACGCGCGC ACATTACGTC
TCGCCGGCCG AAATCAAGAA GCTGTTCCCG CTGATCGAGG AAGATCAGGT CATGGGCGGC
ATGTTCGATC CGGATGCCGG TCTTGTCGTT CCGCGCTCGC AGACTGTCGC CGGCAAGCTG
GTCGATGCGG CGGAAAAGTC CGGCAAGCTG CGGGTCTTCG GCAATACGCC GGCAACCGCG
CTTCTAGTCG AAAATGGACG CATCAAAGGT GTCGTCACAC ATCGCGGCAC GATTCTCGCG
GACCATGTCG TCGTCTGCGC CGGCATTTGG GGCCGCCTGA TCGCCGAAAT GGTCGGCGAA
GACCTGCCCG TCATGCCGGT CGATCATCCG CTCACCTTCT TCGGCCCCTA CAACGAATTC
GAAGGCACCG GCAAGGAAAT CGGCTTCCCG CTGCTGCGCG ACCAGGGCAA CTCGGCCTAT
ATGCGCGACA CCGGCGATCC GAAGACCACC GAGGGCGGTC AGATCGAGTG GGGCTATTAC
GAGACCACCA ATCCGCGCCT CTGCCATCCG CGCGACATTC TCGAAAAACA TCAGGCACGC
CTGTCGCCGT CGCAGCGCGA CCTCGAGATG GAGCAGATCA TCGAGCCGCT CGAGCGCGCA
ATGGAATTGA CGCCGATCCT CGGCGAGCTC GGCTATAATG AGAGCCACTC CTTCAACGGC
CTGCTGCAGG TATCGGCCGC CGGCGGGCCC TCCTGCGGCG AGAGTCAGAA GGTGCGCGGC
CTCTGGTACT GCGTCGCTAT CTGGGTGAAA GATGGCCCGG GCTACGGCAA GCTGATCGCA
GACTGGATGA CGGACGGCCG CACCGAGATC GACCATGCGT CGATTGATTA CGCCCGCTTC
TATCCGCACC AGCTCGAAGA GACGTTCATC GAGCAGCGCT GCTTCGAGGC TGCGCAGAAG
ATCTACTTCC CGGCCGTGCA CCCGCGCGAG CCCTATGCGG GCGGCCGCAA CGTCAAGCGC
TCGCCCTTCT ACGAGCGCGA AAAGGAACTC GGCGGCTACT TCATGGAGCT CGGCGGCTGG
GAGCGCGCGC ACGGTTATGC CGCCAACGAG CACCTGCTCG AGAAATACGG CGACCGTGTT
CCGGTGCGCG AGAACGAGTG GGACAGCCGC CACTTCTGGC GCGTTTCCAA CGCCGAACAT
CTGGCGATGA GCGAGGATTG CGGCATCGTC AACCTCTCCC ACTTCCACAT GGTAGACATT
GAAGGTCCTG ACCACGTGGA GCTTCTTGAG TGGCTCTGCG CCGCCAAGAT CGGCGGCGAC
GGCAATATCG GCAAGGGCAT CTACACGCAT TTCCTCGACG ACGAGGGCAT GGTTCGGGCC
GATTTCACGG TTTTCCGCAT GGCCGATCGC TGCCGTCTCG TGAACGGCGC CGATGCCGGG
CCGCGCGACT TCCACTACAT GCGCCGCGTC GCGGAAGACC GGGGCCTGGA CGTCCGTATC
ACAGACGTTT CGGAGAGATT CACCACGATC GGTATCTGGG GGCCGAATGC CCGCGAAACG
CTGAAAAGGG TGGTGGCAGA TCCGGCCGGT CTCGATCCCG AGAATTTCCC CTTCGCCGCA
ATCCGGCAGA TGGAGATCGC CGGCAAGCCG GTCTCCGCCT TCCGCATCTC CTATGTCGGC
GAACAAGGCT GGGAACTGCA TATGAAATAC GAGGACGGGC TTGCCGTCTG GGACGCGCTG
CGCGCCACGG GGGTCATGGC CTTCGGCGTC GAGACCTATG CCAACTCGCG CCGCATGGAA
AAGAGCCTGC GCCTGCAGAA CGCAGACCTT CTCACCCAAT ATAACCTTAT CGAAGCCGAT
CTTGCCCGTC CGAAAGTCAA GGAAGCGGAC TTCCGGGGCA AGGCGAAGCA CCTGGAATAC
AAGGCGCGCG AGCACCAGCC CGCCATGCTT TGCACGCTCG TGATGACGGA GAACACCGAC
GGGAACGGCG TGAGGCGCTA CCCGGTCGGC AACCTGCCGG TCATGGACCC GGAGACCGGC
GATGTTCTGG TCGACGAACT CGGCCGCCGC TCCTACACCA CTTCGATCGC ATACGGTCCG
ACGATCGGCA AGAATATCGC GCTTGCCTAT CTGCCCTGGT CCTACTGCCA GGTCGGACGA
AGGCTCCATG TCGAGTATTT CGCCGAGACC TATCCCGTCG AAGTGGCCGG CGTCGGTTAC
AAGCCTCTCT ACGACCCGGA GAACCTGAAG CCGCGGACGT AA
|
|---|
| Protein sequence | MAEFPEKAKV VIVGLGGIVG ASIAHHLIER GWDDIVGIDK SGIPTDIGST AHASDFCYTT
SHDYLSVWTT QYSIDFFDRM GHYSRIGGLE VARTGDDVWM EEIKRKLSSA KAFGTRAHYV
SPAEIKKLFP LIEEDQVMGG MFDPDAGLVV PRSQTVAGKL VDAAEKSGKL RVFGNTPATA
LLVENGRIKG VVTHRGTILA DHVVVCAGIW GRLIAEMVGE DLPVMPVDHP LTFFGPYNEF
EGTGKEIGFP LLRDQGNSAY MRDTGDPKTT EGGQIEWGYY ETTNPRLCHP RDILEKHQAR
LSPSQRDLEM EQIIEPLERA MELTPILGEL GYNESHSFNG LLQVSAAGGP SCGESQKVRG
LWYCVAIWVK DGPGYGKLIA DWMTDGRTEI DHASIDYARF YPHQLEETFI EQRCFEAAQK
IYFPAVHPRE PYAGGRNVKR SPFYEREKEL GGYFMELGGW ERAHGYAANE HLLEKYGDRV
PVRENEWDSR HFWRVSNAEH LAMSEDCGIV NLSHFHMVDI EGPDHVELLE WLCAAKIGGD
GNIGKGIYTH FLDDEGMVRA DFTVFRMADR CRLVNGADAG PRDFHYMRRV AEDRGLDVRI
TDVSERFTTI GIWGPNARET LKRVVADPAG LDPENFPFAA IRQMEIAGKP VSAFRISYVG
EQGWELHMKY EDGLAVWDAL RATGVMAFGV ETYANSRRME KSLRLQNADL LTQYNLIEAD
LARPKVKEAD FRGKAKHLEY KAREHQPAML CTLVMTENTD GNGVRRYPVG NLPVMDPETG
DVLVDELGRR SYTTSIAYGP TIGKNIALAY LPWSYCQVGR RLHVEYFAET YPVEVAGVGY
KPLYDPENLK PRT
|
|---|
| |