| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2320 |
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| Symbol | |
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| ID | 5323181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2400629 |
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| End bp | 2402272 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791258 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001327987 |
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| Protein GI | 150397520 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.80263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCCC CATCGGAATC GGATGACAAC TGGTGGCGCG GAGCGGTCAT CTATCAGGTC
TATCCGCGAT CTTTCCAGGA CACCGACGGC GACGGAATGG GTGACCTTCG CGGCGTTACC
CGGCGGCTTC CGCATATCGC CTCGCTCGGT GTCGATGCCA TCTGGCTCTC GCCTTTCTTC
ACCTCGCCCC AAGCGGACAT GGGCTATGAC GTTTCGGATT ATTGCGACGT CGATCCGATG
TTCGGCACGC TCGACGATTT CGACGAGATG ATGGCGGAAG CCCATCGGCT GGGACTCAAG
GTGATTATCG ACCAGGTGAT CTCGCACACA TCCGACCGGC ATCCCTGGTT CATGGAGAGC
CGTTCGAGCA GGACGAATGC CAAGGCGGAC TGGTATGTAT GGGCCGACCC GAAACCGGAC
GGCACGGCGC CGAACAACTG GCTTTCAATC TTCGGCGGCC CGGGCTGGGA GTGGGATGGG
GTCCGCAGGC AATATTACCT GCACAATTTC CTTTCGTCGC AGCCCGATCT CAATTTCCAT
AACCCTGAAG TTCAGGAAGC TGTGCTGGCG ACGGTCCGCT TCTGGCTGGA CCGAGGCGTG
GACGGTTTCA GGCTCGATAC GGCGAACTTC TATTTCCACG ATCGGCTTTT GCGGGACAAC
CCGCCGCTGG TGCCGGATCC GGACGCGACG AGCCGCGACG CGCCAGAGGT CAATCCTTAC
GGCATGCAGA ACCACCTCTA TGACAAGACG CAGCCGGAAA ACATCGATTT CCTGCGCCGG
TTCCGGGCGC TGCTCGATGA ATATGGCGGC CGCGCGACGG TGGGCGAAAT CGGCGACGGA
TCACGCTCGC TGCAGACGGT TGCCGCCTAT ACGAGTGGCG GCGACAAGCT GCACATGTGC
TACACATTCG ACCTGCTCGG ACCGGAATTC ACCGCGCGTC ACATCCGCCG CTGCGTTGAG
AGTTTCCAGG CAACGGTGGC CGACGGCTGG GTCTGCTGGG CCTTTTCCAA TCACGACGTC
ATGCGCCATG TCAGCCGCTT TGCGTTGCGC GAGGCCGACC GTGCGCGCGT GGCGAAGCTC
GCGATTTCGT TGCTGGCCAC TCTGCGGGGC ACCATCTGCC TTTACCAGGG GGAGGAATTG
GGATTGCCGG AAGCCGACCT TGCCTTCGAA GAACTGCGCG ATCCATACGG AATCCGCTTC
TGGCCCGCCT TTGCCGGACG CGACGGATGC CGGACGCCGA TGGTATGGGG AAGTGAACTG
AAGAATGCCG GCTTTTCCGA CGGCGTTCCC TGGCTGCCGG TGCGCGAAGG GCACCGGACG
CTGGCGGTGG ACGCGCAGGA TGGTGTCGAG GGTTCCGTGC TCGAGCACTA TCGAGACACC
CTTGAATTCC GCCGGAGGCG GCCGGCGCTC GTCGATGGAG ACATGGCGTT CCTCGGCACC
AACCAGGATA TTCTGGTCTT CACGCGGGAG AAAGACGGCG ATCGGCTGCT GTTCGTCTTC
AACCTGACGC CGGAACCGCA GACGTTTCAG CTTCCGGCAA CGCTCGTGGC CGAGCCGCTG
CCGATGCCCG GATTCGCGCC GCCTTTCGCG GACAATGCGA TCACGCTTGC TGCGCTCGAC
GTTTTCTGCG GCAGGCTGCG TTAG
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| Protein sequence | MAAPSESDDN WWRGAVIYQV YPRSFQDTDG DGMGDLRGVT RRLPHIASLG VDAIWLSPFF
TSPQADMGYD VSDYCDVDPM FGTLDDFDEM MAEAHRLGLK VIIDQVISHT SDRHPWFMES
RSSRTNAKAD WYVWADPKPD GTAPNNWLSI FGGPGWEWDG VRRQYYLHNF LSSQPDLNFH
NPEVQEAVLA TVRFWLDRGV DGFRLDTANF YFHDRLLRDN PPLVPDPDAT SRDAPEVNPY
GMQNHLYDKT QPENIDFLRR FRALLDEYGG RATVGEIGDG SRSLQTVAAY TSGGDKLHMC
YTFDLLGPEF TARHIRRCVE SFQATVADGW VCWAFSNHDV MRHVSRFALR EADRARVAKL
AISLLATLRG TICLYQGEEL GLPEADLAFE ELRDPYGIRF WPAFAGRDGC RTPMVWGSEL
KNAGFSDGVP WLPVREGHRT LAVDAQDGVE GSVLEHYRDT LEFRRRRPAL VDGDMAFLGT
NQDILVFTRE KDGDRLLFVF NLTPEPQTFQ LPATLVAEPL PMPGFAPPFA DNAITLAALD
VFCGRLR
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