Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2296 |
Symbol | |
ID | 5323157 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2372143 |
End bp | 2374347 |
Gene Length | 2205 bp |
Protein Length | 734 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640791234 |
Product | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor |
Protein accession | YP_001327963 |
Protein GI | 150397496 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.234344 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAACC GGCATCATCG CCTGGCGCTT TTGGCTTGCA CGGCATTCGT TACCCTCGTC GAAACGACAC TTTCTCACGC GCAATCCACC GAGGAGGCGG CAGGTGCCGC CGAAAAGCAG GGGCGCGTAA CAGTGCTGAA GAAACTTTCC ATCCAAGGCG GCGAGAAGGA GGGTGTGGCC GACACGCCGC TCGCAGAACA AGTGACCGAG GAAGAACTCG ACCGCAATCA GATCACGAGC TTCGAAGACC TGGGCAGAAG CCTCGAACCT GGCGTGAACT TCAACCGGAC GAGCGGCAGC GTAAATATAC GCGGCCTCGA AGGGCCGCGC GTGCTGACGA CGATCGACGG CATTCCCATC CCCTTCATCG ACGATGGCGC GCGCGATGCC GATGGCGGCA TAGACAGCTT CGATTTCTCG GCGCTCTCGA CCATCGACAT CGTTCGCGGC GCGGATTCCA GCCGCGCGGG CGGCGGTGCT CTCGGAGGAG CCGTGGTGCT GCGCACGCTC GAACCGGAGG ACCTGATCGG CGAGGGCAAG ACGTGGGGCG GCATCTTCAA ATTCGCCTAT GACGGCGAGG ACGACAGCCT CGGGGGCTCC GCTGCCGTTG CTGCGCGCTA TGACAACACG GCGGCCCTGT TCCAGGGGGG GTACAGGAGG GGGCATGAAC GGGAGAGCAA CGGCGACGTC GGCGGCTATT CCACGACGCG CACCGAGGCC GACCCGGCTG ACTACGACCA GAACAATCTC CTGTTCAAGG TGCGGCAATA TACCGAAAGC GGCCATACTT TCGGCTTCAC GGCCGAGCGC TTCGACCGCG ACAAGGATAT CGACTTCATG TCCGGCCAGA GCCTCTTCGG CAATTATCGG CCGGGCGATT ACGACAAGCT TGATGACACC CGGCGCGAGC GTCTTTCGCT CGATTACGAA TTCGAAGCCA CCGACGACAA CGCTTGGTTC GACAGCGCTT CGGCGACGGT CTACTGGCAG CGGCTGTTGC GCGAAAACGG CGTCGACGCC TACCGCAGCA CGTCGGTGAT CGGCGACTAT TCGCGTCTCA ACGAAGCGGA AGAAGAGGGC TTCGGCGCCA GCGGTTATGT CGAGAAATTC TTTGAAACCG GTAACCTGCA GCACCAGGTG ACGCTCGGCG GCGACTTTGC CATCGGCAAG CTGCATCAAT ATTCCTCGGG CGAGGATAGC TGCGACACGG CGCCGAGCCC ATCATGCAAT TTCCTGCATA CCAACCAGTC TGACAGCCCC GACGTCGACA GCAGGAAAAT CGGCGTCTAC TTGCAGGACC GCATCTCGAT CGGCGACGGA CCCTTCGCGC TGACGCCGGG GCTTCGCCTC GACTGGTACG ACTACGCGCC TGAGAACACG GCCGCCTACA TGCGCAACCC CAACTATGAC GGTTTGCCGC CGGGACAGAG CGACCTCGCG CTGTCGCCGA AGCTGCTTGC AACCTATCAG GCAGCGGAGG AGGTCGAACT CTTCGCGCAA TGGGCAATGG CTTTCCGGCC TCCGACCGCC GAGGAGCTCT ATCTGAATTA CGGCGCACCG GGCAGCTATC TTCAAATAGG CAATCCCGAC CTGAAGCCGG AAACGAGCCA GGGTTTCGAG ATCGGAGCCA ATCTCGGCGA TGAGGAATTC GGCGGTCGCA TCGCTGCCTT CTACAACAGA TACAGAAATT TCATCGATGA GCGCTGGAGT TTCGATCCGA CCGGCACCTA CCCGATCGGC ATCACCGAAG CCATCAACCG CGCCAATGTC TCCATCCATG GCGTCGAGGT CTCGGGGCAC AAGGTTTTCG CCAATGGTGT CCACGTGCGT ACCGCGCTCG CCTACGCTCA CGGCCGCGAT CTCGATACCG ACGAAGTCCT TGGTTCTGTT GCCCCGTTGA AAGGCGTCCT CAATGTCGGC TACGCCGCAG AGACCTGGGG AACCGATCTC ATCGTGACAG CCGCGATGGA CGTGTCCGAC AAATCGACGA ACAGTTTCAA GGCGCCGGGC TATGGCATCG TCGATGTCAC CGGCTGGTGG GAGCCGGAGC AAATGCCGGG TCTCAGAGTA AATGCCGGCG TCTACAACAT CTTCGACAAG ACCTATTGGG ACGCGGTGAA CACGCAGAAC GCGTTCACGC AGCCCGCCGA CTTCTATTCG GAGCCGGGGC GCACTTTCAA GGTCTCGCTG ACACAGCGGT TCTGA
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Protein sequence | MLNRHHRLAL LACTAFVTLV ETTLSHAQST EEAAGAAEKQ GRVTVLKKLS IQGGEKEGVA DTPLAEQVTE EELDRNQITS FEDLGRSLEP GVNFNRTSGS VNIRGLEGPR VLTTIDGIPI PFIDDGARDA DGGIDSFDFS ALSTIDIVRG ADSSRAGGGA LGGAVVLRTL EPEDLIGEGK TWGGIFKFAY DGEDDSLGGS AAVAARYDNT AALFQGGYRR GHERESNGDV GGYSTTRTEA DPADYDQNNL LFKVRQYTES GHTFGFTAER FDRDKDIDFM SGQSLFGNYR PGDYDKLDDT RRERLSLDYE FEATDDNAWF DSASATVYWQ RLLRENGVDA YRSTSVIGDY SRLNEAEEEG FGASGYVEKF FETGNLQHQV TLGGDFAIGK LHQYSSGEDS CDTAPSPSCN FLHTNQSDSP DVDSRKIGVY LQDRISIGDG PFALTPGLRL DWYDYAPENT AAYMRNPNYD GLPPGQSDLA LSPKLLATYQ AAEEVELFAQ WAMAFRPPTA EELYLNYGAP GSYLQIGNPD LKPETSQGFE IGANLGDEEF GGRIAAFYNR YRNFIDERWS FDPTGTYPIG ITEAINRANV SIHGVEVSGH KVFANGVHVR TALAYAHGRD LDTDEVLGSV APLKGVLNVG YAAETWGTDL IVTAAMDVSD KSTNSFKAPG YGIVDVTGWW EPEQMPGLRV NAGVYNIFDK TYWDAVNTQN AFTQPADFYS EPGRTFKVSL TQRF
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