| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2223 |
|---|
| Symbol | |
|---|
| ID | 5323084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2299716 |
|---|
| End bp | 2301770 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640791161 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_001327890 |
|---|
| Protein GI | 150397423 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.909568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAA AAGTCAAAGA AAACGAAGAA GCCGACGTTG AACGTGAAGG TGCGCCGGAC
GGTCCGCTTC TCGATCTTTC CGACGACGCT GTCAAGAAGA TGATCAAGGC CGCCAAGAAG
CGCGGCTATG TGACGATGGA CGAGCTAAAC TCCGTTCTGC CTTCCGAGGA AGTGACTTCC
GAGCAGATCG AGGACACGAT GTCCATGCTT TCCGACATGG GCATCAACGT CATCGAAGAC
GAAGAAGCCG AGGAAGCTGG TGGCAGTGAC GACGATGACA GCAGCGACGA TGCTGAAAGC
GAAGGCGGCG AACTCGCGCC TGCCAGCGGC ACCGCGCTTG CGACCAGCAA GAAAAAAGAG
CCGACCGACC GTACCGACGA TCCCGTGCGC ATGTATCTGC GCGAGATGGG CTCGGTCGAG
CTATTGTCGC GCGAAGGCGA AATCGCCATT GCCAAGCGCA TCGAGGCTGG CCGTGAAACG
ATGATCGCCG GGCTCTGTGA GAGCCCGCTT ACTTTCCAGG CGTTGATTAT CTGGCGCGAC
GAATTGAACG AAGGCCAGAC GCTGCTGCGC GAGATCATCG ATCTCGAGAC GACCTATTCC
GGCCCGGAAG CCAAGGCTGC TCCGCAGTTT CAGAGCCCGG AAAAGATCGA AGCCGACCGC
AAGGCGGCAG AAGAGAAGGA AAAGGTCCGC AAGACTCGCG CTGCGGCCAA CGACGACGAC
ATCACCAATG TCGGCGGCGA AGGCCAGCCC GCCGAGGAAG AGGAGGACGA CGACGACGAG
TCGAACCTCT CGCTCGCCGC GATGGAAGCG GAACTGCGCC CGCAGGTGAT GGAGACGCTG
GACGTCATCG CCGAGACTTA CAAGAAGCTC CGCAAGCTGC AGGACCAGCA GGTCGAGGCG
CGCCTTGCCG CGACCGGAAC TCTGTCGCCG GCACAGGAGC GCCGCTATAA GGAACTGAAG
GACGAGCTGA TCAAGGCGGT GAAGTCGCTG TCGCTCAACC AGAACCGCAT CGACGCTCTG
GTCGAGCAGC TTTACGACAT CTCCAAGCGC CTGACGCAGA ACGAGGGCAG GCTGCTGCGC
CTGGCCGAAT CCTATGGTGT CAAGCGCGAG GCTTTCCTGG AGCAGTATTC CGGCGCCGAG
CTCGATCCGA ACTGGATGAA GTCGATCAGC AATCTCGCGG GCAAAGGCTG GAAGGAGTTT
GCCAGGGCGG AGAACCAGAC GATCCGCGAC ATCCGCCAGG AGATCCAGAA TCTCGCGACG
GAGACCGGCA TTTCCATCGC CGAATTCCGC CGCATCGTGT CCATGGTGCA GAAGGGCGAG
CGCGAAGCAC GCATTGCCAA GAAGGAAATG GTCGAGGCAA ACCTCCGTCT CGTGATTTCG
ATCGCCAAGA AGTACACGAA CCGCGGGCTT CAGTTCCTCG ATCTCATCCA GGAAGGCAAT
ATCGGCCTCA TGAAGGCGGT TGACAAATTC GAATACCGCC GCGGCTACAA GTTCTCGACC
TATGCGACCT GGTGGATCCG ACAGGCGATC ACCCGTTCGA TCGCCGACCA GGCCCGCACG
ATCCGCATCC CGGTGCACAT GATCGAGACG ATCAACAAGA TCGTCCGTAC CTCGCGCCAG
ATGCTTCACG AGATCGGCCG CGAGCCGACG CCGGAGGAAC TGGCGGAAAA GCTCGCAATG
CCGCTCGAGA AGGTGCGCAA GGTTCTGAAG ATCGCCAAAG AGCCGATCTC GCTCGAAACC
CCCGTTGGCG ACGAGGAAGA TTCGCATCTC GGCGATTTCA TCGAGGACAA GAATGCGCTG
CTGCCGATCG ACGCGGCCAT TCAGGCGAAC CTCAGAGAGA CGACGACTCG CGTGCTCGCC
TCGCTCACGC CGAGAGAGGA GCGTGTGCTG CGCATGCGTT TCGGCATCGG CATGAACACC
GACCACACGC TGGAAGAAGT CGGCCAGCAG TTCTCGGTCA CCCGCGAACG CATCCGGCAG
ATCGAAGCCA AGGCGCTGCG CAAGCTCAAG CATCCGAGCC GCTCGCGCAA GCTGCGCTCG
TTCCTGGACA GCTGA
|
|---|
| Protein sequence | MATKVKENEE ADVEREGAPD GPLLDLSDDA VKKMIKAAKK RGYVTMDELN SVLPSEEVTS
EQIEDTMSML SDMGINVIED EEAEEAGGSD DDDSSDDAES EGGELAPASG TALATSKKKE
PTDRTDDPVR MYLREMGSVE LLSREGEIAI AKRIEAGRET MIAGLCESPL TFQALIIWRD
ELNEGQTLLR EIIDLETTYS GPEAKAAPQF QSPEKIEADR KAAEEKEKVR KTRAAANDDD
ITNVGGEGQP AEEEEDDDDE SNLSLAAMEA ELRPQVMETL DVIAETYKKL RKLQDQQVEA
RLAATGTLSP AQERRYKELK DELIKAVKSL SLNQNRIDAL VEQLYDISKR LTQNEGRLLR
LAESYGVKRE AFLEQYSGAE LDPNWMKSIS NLAGKGWKEF ARAENQTIRD IRQEIQNLAT
ETGISIAEFR RIVSMVQKGE REARIAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN
IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKIVRTSRQ
MLHEIGREPT PEELAEKLAM PLEKVRKVLK IAKEPISLET PVGDEEDSHL GDFIEDKNAL
LPIDAAIQAN LRETTTRVLA SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ
IEAKALRKLK HPSRSRKLRS FLDS
|
|---|
| |