| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2213 |
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| Symbol | |
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| ID | 5323073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2291664 |
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| End bp | 2293502 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791150 |
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| Product | SARP family transcriptional regulator |
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| Protein accession | YP_001327880 |
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| Protein GI | 150397413 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.226859 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.3766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGGTGC CGCATTTTCA TCTGCAGACA TTCGGGGAAT TGCGGCTGGT CGATTCCGGC
GGCGTGGTCG TGGCGTGCCC GGAGCGGGGC CTGCTTATTC TGGCCTACCT CAGCATATCC
GGGCAGAGAA CGGTCTCCCG CGAAAAGCTC TCGATGCTGA TCTGGCCCGA GCGGGAGAAG
AGCGTCGCTT TCAAGAACCT GCGCTCTACC CTGTGGCGCA TGCGCCACCT TGCCGCGAAC
TCGGGGCCGC TCACGTCGGC GACGGAAATA GATGTGACGC TGGGGGAGAT TGCCTGCGAC
GCCGCCGGTT TCGAGGCGCT CGGGAGCTCG GAGGAAGCGT TTCGCGCCGG GCTCTCGCTC
TGGCGCGATA CGTTCCTAGC AGGCGCCGAT GTGCCTCCCG GGCGTTATGC GGACTGGGTT
GGAGAGCAGC GGAGCGTGTT TACGCAAAAG CTGCGCGCGG CACTTTTAGC CGGCGGAGAG
CGATTTGCCG ACAGGTCGAT GCTGCGGACG GCGTGCATGC ATCTCCTCGA ACTCGATCCG
GCGGATACTG CCGTGCGCGC AATCCTGGAG CGGTTGACCG GCGTGGGTCT CGTCATCGGG
AAAGGCTCGC CGGACGGGGC CTGGCTGCGG CAGGGGGCCT TTGCAGGGGA GTCGCCCCGG
GCGCCGGCAA GGGATGCGAT AACCCCGCCG GTTGCGCCCG CACCGCGCGT TGCGCTGCTT
CCGCCCGCGG CTTTCGGCAG TGATCCGATG CTTCACGCGG TCAGCATGGC CGTGGTCGAA
GACATCACGA TCGGATTATG CGCGCTGCGC TCGATGTCGG TTGTTGCCCC TTACACTGCC
GAGCGTATTC GGGATGCGGC GGACAAGGCT GCCTTCCTGG AAAAACATGC CGTCACTTAT
GCGCTCGACT GTCGCATGTC GGACCAGGGG CTGTTTACTC AACTCATCTT CCTGCCGTCC
GACGCGATCG TCTGGGCGGA GCGCTTTTCG ATCTCTCCGG TCGGGCTCCT GCAACAGCGT
CAGGAAATTG CCTTTCACGT GGCCAGCGCG GTAGCGGAAC AGGTGGAGAC CGGGCGTATC
GGGCACCTCG ATTACGTGAC CAATCCGGAC GCCTATTACG CCTATCTCGC CGGCCTGCGA
AACCTTTCGA ACGTCGGCCT TCCCGAAATC CGCAGGGCAC GCCGCGATTT CAAGACGGCG
CTCAGGCACA AGCCGGATTT TGCCCCGGCG CTAAGCGGCA TCGCACGCAC CTATGCGATC
GAGTGGGTCC TGACGGCTCG GGGCGACCAG GAGCTTTTGA CGGTAGCCGA GCGTCACGCC
AAGGAAGCGA TCGAGAGCGA TGAAGAGCTT CCCGGAGCAC ATCGCGAATT CGGCGTCGTC
AGACTTTATC AGGGCGACCT CGATGGAAGT CTTGCGGCGC TGGACCGCGC CGAAAATCTG
AGCCCGCATT ATGCCGACGT GCTGTACAGC CATGCGGACA CGCTCGTCCA TGCCTCCCGC
CCGCGTGAGG CTCTCGACAA GCTCGGCAAG GCGCTTTCGC TTAATCCCCT GGCGCCGGAC
ATGTATTTCT GGAGCGCTGC CGGAGCCAGC TACTTTCTCG AAGAGTATGA GGATGCGATC
GGCTACGTTC AGAAAATGAA GGACAAGTCG CCGGGCGACC GGCTGCTTGC AGCAAGCTGG
GCGATGCTCG GCGATCAGAA GAAAGCGCGG TCATACAAGG TGAAGGCCCT GAGGGCCAAT
CCGACATTCG ATGTCGACAA GTGGCTCGCC GTCGTTCCGA TGAAGGAACA ATGGCAGAAG
GACCTCTATC GCGAGGGGCT GAAAAGAGCG GGGTTTTGA
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| Protein sequence | MAVPHFHLQT FGELRLVDSG GVVVACPERG LLILAYLSIS GQRTVSREKL SMLIWPEREK
SVAFKNLRST LWRMRHLAAN SGPLTSATEI DVTLGEIACD AAGFEALGSS EEAFRAGLSL
WRDTFLAGAD VPPGRYADWV GEQRSVFTQK LRAALLAGGE RFADRSMLRT ACMHLLELDP
ADTAVRAILE RLTGVGLVIG KGSPDGAWLR QGAFAGESPR APARDAITPP VAPAPRVALL
PPAAFGSDPM LHAVSMAVVE DITIGLCALR SMSVVAPYTA ERIRDAADKA AFLEKHAVTY
ALDCRMSDQG LFTQLIFLPS DAIVWAERFS ISPVGLLQQR QEIAFHVASA VAEQVETGRI
GHLDYVTNPD AYYAYLAGLR NLSNVGLPEI RRARRDFKTA LRHKPDFAPA LSGIARTYAI
EWVLTARGDQ ELLTVAERHA KEAIESDEEL PGAHREFGVV RLYQGDLDGS LAALDRAENL
SPHYADVLYS HADTLVHASR PREALDKLGK ALSLNPLAPD MYFWSAAGAS YFLEEYEDAI
GYVQKMKDKS PGDRLLAASW AMLGDQKKAR SYKVKALRAN PTFDVDKWLA VVPMKEQWQK
DLYREGLKRA GF
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