Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2205 |
Symbol | |
ID | 5323065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2285391 |
End bp | 2285999 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640791142 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001327872 |
Protein GI | 150397405 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.270822 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGCGA CACAAAACAC ACGCGAACGT ATCGTTTCCG CCGCTGCCAG GCTGTTCTAT GCGGAAGGAA TTCGCGCCGT CAGCGTGGAC GCCGTTGCCG AGGCGGCCGG CTTGACGAAG CGCACTCTCT ACTATCATTT CAAGAGCAAG GACGAGTTGA TTGCCGCCTA TCTTGAGGAG CGTGACCAGC CCAACCTCAA GCTCTTCCAG AAGTGGTTCA GCGAAACCGA CGGTGATGCG GCGTCAAAGA TCAAAGCCAT TTTTCTCAAT CTCGCCCGGG CTGCCCGGCA CCCGAAATGG AAGGGCTGCG GTTTCCTCCG CACTTCGGCG GAACTCGCCA ATATGCCCGG CCACCCGGCG ATCCGCATAG CGGCAGCGCA CAAAAGGAAG TTCGAGGACT GGCTGCGTCA GAGCTTCGAG ACGGAAGGAA TTGCAGAGGC GGCCAGGCTC GCGCGGCAGA TGCTGCTGCT CCTCGACGGC AGCTTCGCGG TCGTTTTGCT CCACCGTGAT CCGAGCTATA TGGAGACGGC GGGCGAGGCC GCGGCTACGC TCGTAAAGCT GGCGCTTTCG GAACCGAGTG TGCAGCAACC AGCCGGGAGG GGCAAATGA
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Protein sequence | MAATQNTRER IVSAAARLFY AEGIRAVSVD AVAEAAGLTK RTLYYHFKSK DELIAAYLEE RDQPNLKLFQ KWFSETDGDA ASKIKAIFLN LARAARHPKW KGCGFLRTSA ELANMPGHPA IRIAAAHKRK FEDWLRQSFE TEGIAEAARL ARQMLLLLDG SFAVVLLHRD PSYMETAGEA AATLVKLALS EPSVQQPAGR GK
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