| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2178 |
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| Symbol | |
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| ID | 5323038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2250833 |
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| End bp | 2252422 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640791116 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001327846 |
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| Protein GI | 150397379 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.246301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.618007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATT ACAAAGACTA CTTGGCTCGT CAGGTCATGC TCGGCAAGAT GAAGCGGCGC
GAGTTTCTCG GACGCGCAGC CGCTCTCGGC ATTGCCGCGT CGAGCGCAAA TATGCTCTTC
GCGTCCAGCG CCGCAGCGCA GGAGCCAAAA CGCGGCGGTC ACCTTAAGCT CGGCCTAGAA
GGGGCTGCTG CAACGGACTC GCGGGACCCC GCAAAGGCCC TGTCGCAATT CATGTTCGTC
GTCGGCCGCA ACTGGGGCGA CATGCTGGTC GAGAGCCATC CGACGACCGG CGAGCCGGTG
CCGGCACTTG CGGAATCCTG GGAACCCTCC GCCGATGCGT CCACCTGGAC CTTTACGATC
CGCAAGGGCG TGAAATTCCA TGACGGCAAG GAACTGACGA TCGACGACGT CATCAAGACT
CTGCAGCGAC ACACGGATGA AAAATCCGAG TCCGGCGCGC TCGGCGTGAT GAAATCCATC
AAGGAAATCA AGGCCGATGG CGATAAGCTC GTCCTGGTGC TGACGGAAGG CAATGCGGAC
CTGCCGCTGC TTTTGACCGA CTACCATTTG ATCATCCAGC CGAACGGCGG CACCGACAAT
CCCGATGCGA TGATCGGTAC CGGTCCCTAC AAGGTCGCAA GCTTCGAGCC GGGCATACGC
GCCACGTTCG AGAAGAACCC GGACGACTGG CGCACCGACC GCGGCTTCGT CGATTCCATC
GAATTGATCG CCATGAACGA CGCGACGGCG CGTGTCGCGG CGCTTTCCTC GGGCCAGGTC
CACTTCATCA ACCGCGTCGA TCCTAAAACC GTCAATCTGC TGAAGAAGGC GCCGACTGTT
GAAATCCTCA ACACGTCCGG CCGCGGCCAC TACGTGTTCA TCATGCATTG CAACACGGCG
CCCTTCGACA ACAACGATCT GCGCATGGCG CTGAAATATG CCATGGACCG CGAGACCCTC
GTAGAGCGCA TCCTCGGCGG CTACGGCAAG ATCGGGAACG ACTTCCCGAT CAACGACACC
TATGCGCTTT TCCCGGAAGG GATAGAGCAA CGCACTTACG ACCCCGACAA GGCCGCATTC
CACTACAAGA AATCCGGCCA TAGCGGTCCG GTGCTGCTGC GCACCTCCGA CGTCGCCTTC
CCGAACGCGG TCGACGCCGC GGTTCTCTAC CAGGCGAGCG CCAGGAAGGC CGGCATCGAG
ATCGAGGTCA AGCGCGAGCC CGGCGACGGC TACTGGTCCA ATGTCTGGAA CGTCCAGCCT
TTCTCGACAT CTTATTGGGG CGGACGCCCG ACCCAGGATC AGATGTACTC CACCGCCTAT
CTCTCGACGG CCGACTGGAA CGACACCCGT TTCAAGCGTC CGGATTTCGA CAAGATCCTG
CTTGAGGCGC GTTCCGAGCT GGACGAAGCC AAGCGCAAGG ACATGTACCG CACCATGGCG
ATGATGGTGC GCGACGAGGG CGGCCTGATC CTGCCCATGT TCAACGACTT CGTGAACGCG
GCCGGCAAGA CGGTGAAGGG CTATGTCCAC GACATCGGCA ACGACATGTC CAACGGCTAT
GTCGCGACCA GGGTATGGCT GGACGCCTGA
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| Protein sequence | MSDYKDYLAR QVMLGKMKRR EFLGRAAALG IAASSANMLF ASSAAAQEPK RGGHLKLGLE
GAAATDSRDP AKALSQFMFV VGRNWGDMLV ESHPTTGEPV PALAESWEPS ADASTWTFTI
RKGVKFHDGK ELTIDDVIKT LQRHTDEKSE SGALGVMKSI KEIKADGDKL VLVLTEGNAD
LPLLLTDYHL IIQPNGGTDN PDAMIGTGPY KVASFEPGIR ATFEKNPDDW RTDRGFVDSI
ELIAMNDATA RVAALSSGQV HFINRVDPKT VNLLKKAPTV EILNTSGRGH YVFIMHCNTA
PFDNNDLRMA LKYAMDRETL VERILGGYGK IGNDFPINDT YALFPEGIEQ RTYDPDKAAF
HYKKSGHSGP VLLRTSDVAF PNAVDAAVLY QASARKAGIE IEVKREPGDG YWSNVWNVQP
FSTSYWGGRP TQDQMYSTAY LSTADWNDTR FKRPDFDKIL LEARSELDEA KRKDMYRTMA
MMVRDEGGLI LPMFNDFVNA AGKTVKGYVH DIGNDMSNGY VATRVWLDA
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