| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2172 |
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| Symbol | |
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| ID | 5323032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2242627 |
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| End bp | 2243616 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791110 |
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| Product | helix-turn-helix domain-containing protein |
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| Protein accession | YP_001327840 |
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| Protein GI | 150397373 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0036608 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGGAA GTTTCGGCGT GGACAGCAGC ACTTCGCAAG CGCAGCATCT CGATCTGCTG
ATATTGCCGG AGACCAATCT CATTCTTGTC GCTTCGGTGG TCGAGCCCTT ACGCGCCGCC
AATCGGATAG CCGGGCGCCC GCTTTACAGC TGGGCCCTGT TCAGCCCTGA CGGAAATGCG
ATCGAGACGA AAAGCGGCAT TCCCATTCCG GTGGCCGGGG CCTTCCGTCC GCAGCGCGAG
ACTGCGCCGC TCTTCGTGCT TTCCAGCTAC CACTGGCAGC GCAGCGCCAC CGTGCAGCTC
AAGATGTTCC TGTCGCAGAC GGCGCGGCAC AGGGAGACGA TGGCGGGAAT CGAATCCGGC
TCCTGGCTCC TTGCGGAGGC GAGCCTCCTC GACAATTTCT CGGCCACCAC CCATTGGGAG
GACTTCGAGG ACTTCTCGGC CGCCTATCCG CAGGTCACGA TGGTGCGCGA CCGGTTCGTC
ATCGACCGCA AGCGCATTAC CACCGGCGGC TCGCTGCCGA CGCTGGATCT GATGCTGGAA
CTGATCCGCC GCGCGCACGG CTACTCGCTG GCACTCGAAG TATCCCGCCT CTTCATTTAC
GAGCAGGAGC GCACGCGCGG GGACCTCCTG CAGGTGCCGG CCATCGGCAA TATGCGCATT
CTGGATGCGC GGGTCGGTGC AGCGGTAAAG CTTATGGAGG AGACGGTAGA GGCACCGCTG
ACACTCGCCC GGCTGGCGCG CCGGGCAGGC ATCAGTGCCC GGCATCTGCA GGATCTCTTC
AAGGAGACGA TGGGTGTCGC TCCGCACGAG CACTATCTGG CGCTCCGGCT CAACGCGGCG
CGTCGCAAGG TGATCGAGAC GCGGATGGCG TTCGCCGATA TCGCGGCGAT TTCCGGCTTC
AATTCCTCGT CTTCATTTTC CCGCAGCTAT AGGGCTCATT ATCGAGAAAG CCCAAGTGAG
ACACGCCGGC GGCTCAAGTT GAAGAACTGA
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| Protein sequence | MGGSFGVDSS TSQAQHLDLL ILPETNLILV ASVVEPLRAA NRIAGRPLYS WALFSPDGNA
IETKSGIPIP VAGAFRPQRE TAPLFVLSSY HWQRSATVQL KMFLSQTARH RETMAGIESG
SWLLAEASLL DNFSATTHWE DFEDFSAAYP QVTMVRDRFV IDRKRITTGG SLPTLDLMLE
LIRRAHGYSL ALEVSRLFIY EQERTRGDLL QVPAIGNMRI LDARVGAAVK LMEETVEAPL
TLARLARRAG ISARHLQDLF KETMGVAPHE HYLALRLNAA RRKVIETRMA FADIAAISGF
NSSSSFSRSY RAHYRESPSE TRRRLKLKN
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