| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2168 |
|---|
| Symbol | |
|---|
| ID | 5323028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2238792 |
|---|
| End bp | 2239952 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640791106 |
|---|
| Product | putative periplasmic binding ABC transporter protein |
|---|
| Protein accession | YP_001327836 |
|---|
| Protein GI | 150397369 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.198501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAT GGTACAGAGA GAATGCCCCG ATCACTGCGG ACAAGCTTGC CGACGAGCTG
ATGCGCCTGA AGCGCGGCTC CGTTTCGCGC CGTCATTTCC TTGGTGTCAC CGGCCTCGGC
CTCGCGACCG CCGTCCTGGC GCGTCAGCCG GGCCTGTTCA ACTCCACCGC TTACGCCGAA
GACCTTGGCA CGCAGATGTC GATCGCGACC TGGCCCAACT ATCACGATCC CGCCACCTTC
GAAGCCTTCA CCGCTGCGAC GGGCGTCGCC GTCGAAGTCA ATGTCTTCGG CTCCAACGAG
GAAATGCTTG CAAAGCTCCA GGCCGGCGGA ACCGGCTGGG ACCTCTTCGT GCCCACGAAC
TACACGATCT CCACCTATGT GAAGCTTGGC CTGATCGACG AGCTCGATCT CTCCAAGCTG
CCGAACTACG ATGCCTCGAC GGAGAACGCG CGATTCACCA GCGAAGGCGT CGTCGAGGGC
AAGACCTATG CCGTGCCGAA GAATTGGGGA ACGACCGGAA TTGCGGTGAA TTCCGACAAG
ATCAAGGCTC CGGTTGCGAG CTGGAAGGAC TTCTTCGAGA TCGCGATGAC GGAAGGCGAC
GGCCGCGCCA TGGTGCACGA CTATCAGCTC ACCACCATCG GCAATGCGCT CGTTTCCCTC
GGTTTCTCCT TCAATTCGAT CAAGCCGGAG GAGCTCGCCA AGGCCGAAGA GCTCCTGATC
AAGGTCAAGC CGCATCTCTA CGCGATCAAC AGCGACTATC AGCCGGCGAT GCGCGCCACC
GATGCATGGA TGACCATGTG CTGGACCAAT GACGGAGCGC AATTGAACCG CGACATGCCG
GAGATCAAGT TCGTCCTCGG AAAGGATGGC GGCGAAATCT GGTCGGATTT CTACGCGATC
CCGAAGAGTG CGGCGAACAA GGCCGCCGGT TACGCGCTGC TCGATTATCT GATGGCCCCG
AATAGCGCGG TCAAGGAACA CATCGCCAAC GGCGCACCGA CGACCGACAG CCGGGTTCTC
AAGCTGCTGC CTGCAGACGT CACCTCGAAC AAGATCGTCT ATCCGGACGA AGCGGCTCTC
AGCCCACTCG AATTCGGCGC TGCGGTGACG CTCACCGACC CGGGCCGGGC CGAGCTGATG
GCGCGCTTCA AATCGGCTTG A
|
|---|
| Protein sequence | MTKWYRENAP ITADKLADEL MRLKRGSVSR RHFLGVTGLG LATAVLARQP GLFNSTAYAE
DLGTQMSIAT WPNYHDPATF EAFTAATGVA VEVNVFGSNE EMLAKLQAGG TGWDLFVPTN
YTISTYVKLG LIDELDLSKL PNYDASTENA RFTSEGVVEG KTYAVPKNWG TTGIAVNSDK
IKAPVASWKD FFEIAMTEGD GRAMVHDYQL TTIGNALVSL GFSFNSIKPE ELAKAEELLI
KVKPHLYAIN SDYQPAMRAT DAWMTMCWTN DGAQLNRDMP EIKFVLGKDG GEIWSDFYAI
PKSAANKAAG YALLDYLMAP NSAVKEHIAN GAPTTDSRVL KLLPADVTSN KIVYPDEAAL
SPLEFGAAVT LTDPGRAELM ARFKSA
|
|---|
| |