| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2150 |
|---|
| Symbol | tpiA |
|---|
| ID | 5323010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2219125 |
|---|
| End bp | 2219892 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791088 |
|---|
| Product | triosephosphate isomerase |
|---|
| Protein accession | YP_001327818 |
|---|
| Protein GI | 150397351 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0149] Triosephosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.790735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGT CGGGGCTCTG GGTCGGCACG AGCTGGAAGA TGAACAAGAC GTTGGCGGAG
GCCATGGTCT TCGCCGATGG TCTTGCGGCC GCAGACGCGA CGCGCGACGC GCGCATTCAA
CGCTTCGTCG TCCCTCCGTT CACGGCCGTA CGACAAGTCA AGGAAAGGCT GAACGGAACC
AGCGTCAAAG TCGGTGCGCA GAACATGCAT TGGGACGATG CGGGAGCCTG GACCGGCGAA
ATTTCACCGA TGATGCTCAA GGACTGCGGT CTCGATATCG TCGAGCTTGG TCACAGCGAA
CGGCGCGAGC ATTTCGGCGA AACCGACCGA ACCGTGGGCC TGAAAACCGC GGCCGCCGTG
AAGCACGGTC TGGTGCCGTT GATCTGCATC GGTGAGACGC TCGCCGAACG CGAGGCAGGT
GAAGCGGACA CGGTGTTGAG GCGCCAGGTG GAAGGCGCCC TTGCATTCCT CGGGGGCGCG
GCAAGGACGG CCCCTGTTCT CCTGGCTTAC GAGCCGGTCT GGGCGATCGG CGTCAACGGC
ATACCGGCGA CAGCCGGCTA CGCCGACGCC CGCCACAAGA TCATTGCCGA CGTCGCTCAG
CGTGCGCTCG GGGTGAAGGT TCCGGTGCTC TATGGCGGCA GTGTCAATCC CGGAAATTGC
GAGGAACTGA TCGCTGAGCC GCACATCGAC GGGCTCTTCA TCGGCCGCTC CGCCTGGGAG
GTTGGCGGCT ATCTCGACAT CTTGCAACGC GTAGCCCGGG CGATCTGA
|
|---|
| Protein sequence | MSKSGLWVGT SWKMNKTLAE AMVFADGLAA ADATRDARIQ RFVVPPFTAV RQVKERLNGT
SVKVGAQNMH WDDAGAWTGE ISPMMLKDCG LDIVELGHSE RREHFGETDR TVGLKTAAAV
KHGLVPLICI GETLAEREAG EADTVLRRQV EGALAFLGGA ARTAPVLLAY EPVWAIGVNG
IPATAGYADA RHKIIADVAQ RALGVKVPVL YGGSVNPGNC EELIAEPHID GLFIGRSAWE
VGGYLDILQR VARAI
|
|---|
| |