| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2121 |
|---|
| Symbol | |
|---|
| ID | 5322981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2184895 |
|---|
| End bp | 2186541 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640791059 |
|---|
| Product | thiamine pyrophosphate protein |
|---|
| Protein accession | YP_001327789 |
|---|
| Protein GI | 150397322 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.299662 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGG GCGGACAACT GGTGGTGGAG GCGCTTGTCG CCAATGGGGT GAAGCGCATC
TCCTGCGTTC CGGGCGAAAG CTATCTGGCC GTGCTCGATG CGCTCTACGA CTCGGACGTC
GAAGTCGTCG TCTGCCGGCA GGAGGGCGGC GCGGCCATGA TGGCGGATGC TTGGGGACGG
CTGACGGGCG AACCGGGCAT CTGCATGGTC ACCCGCGGCC CGGGCGCAAC CAATGCCTCC
GCCGGGCTCC ATGTGGCACG GCAGGATTCG GTTCCCATGA TCCTCTTCAT CGGCCAGGTG
CAGCGGGAGG CGCGCGAGCG GGAGGCTTTC CAGGAGATCG AATACCGTCG CGCCTTCACC
GAGGTCGCAA AATGGGTGGG CGAGATAGAC GACCCGGCAC GCATCCCCGA ATTCGTCACT
CGCGCCTTCG CCGTCGCGAC GTCCGGCCGC CCCGGCCCAG TGGTCCTGAC CTTGCCGGAG
GACATGCTGA CACAGAGTGC CGAGGCCCCG GCCGCACGCG CCTACCAACC GGTGGAAAGC
CACCCTGGAA CCGGCCAAAT CGCGCGCCTC GCGGAACTTC TCTCTTCAGC GAAAAGGCCG
ATCGCCATTC TCGGCGGCAC GCGCTGGTCT GCCGAAGCCG CGGCCGGGCT CAAGAGCTTC
GCCGAACGCT GGCACCTCCC GGTCGGCTGC TCCTTCCGTC GGCAGATGCT TTTCGACCAC
CTGCACCCGA ATTATGCGGG CGATGTCGGC ATCGGCATCA ATCCGGCACT GGCAGGAGAG
ATCAGGGAAG CCGATCTCAT CCTCCTCATC GGCGGCCGGT TCTCGGAAAT GCCCTCCTCC
GGCTACACGC TGATCGACGT CCCCTACCCC AGGCAGACCC TGGTGCATGT CCATCCGGAT
CCGGGGGAAC TCGGCCGGGT CTACCGTCCG GACCTCGCGA TTGCCGCGAG CCCGCAGGAC
TTCGTCGCGG CGCTCTCCGG CCTGACGCCT GCGGCCGAAC CCAGCTGGTC CGCCCGCACA
AGGGAAATGC ATGCTGCCTA TCTCAAATGG TCGACGCCGC CGGAAAAGGG ACCGGGCGAC
GTTCAGATGG GCCCGATCGT CAACTGGCTG GAAGCGAATA CGGGGCCGGA GACGATTTTT
ACCAACGGCG CGGGCAACTA CGCGACCTGG CTCCATCGCT TCCACCGCTT CCGCCGTTAC
GGCACGCAGG CTGCTCCCGC TTCCGGTTCG ATGGGCTACG GCCTGCCGGC CGCTGTCGCA
GCCAAGCATC TGCATCCCGA CCGCGAGGTG ATCTGCTTTG CCGGAGACGG CTGTTTCCTC
ATGCACGGCC AGGAATTCGC GACGGCCGTC CGCTACGGAC TCCCCCTTAT CGTGCTCGTC
ATCAACAACA ACATCTACGG CACGATCCGC ATGCACCAGG AGCGCGAATA TCCCGGCCGC
GTCAGTGCCA CGGATCTGAC GAACCCGGAT TTTGCCGCAC TTGCCCGCGC CTATGGCGGA
CATGGCGAAA CGGTGGCGCG CACCGAGGAG TTTGCGGACG CTTTCCTGCG TGCGCGTGAA
AGCGGCAAGC CCGCCATTAT CGAGGTCAAG CTCGATCCGG AAGCGATCAC GCCGACGCGG
ACGCTGAGCG AGATCCGCAA AGGATAG
|
|---|
| Protein sequence | MKTGGQLVVE ALVANGVKRI SCVPGESYLA VLDALYDSDV EVVVCRQEGG AAMMADAWGR
LTGEPGICMV TRGPGATNAS AGLHVARQDS VPMILFIGQV QREAREREAF QEIEYRRAFT
EVAKWVGEID DPARIPEFVT RAFAVATSGR PGPVVLTLPE DMLTQSAEAP AARAYQPVES
HPGTGQIARL AELLSSAKRP IAILGGTRWS AEAAAGLKSF AERWHLPVGC SFRRQMLFDH
LHPNYAGDVG IGINPALAGE IREADLILLI GGRFSEMPSS GYTLIDVPYP RQTLVHVHPD
PGELGRVYRP DLAIAASPQD FVAALSGLTP AAEPSWSART REMHAAYLKW STPPEKGPGD
VQMGPIVNWL EANTGPETIF TNGAGNYATW LHRFHRFRRY GTQAAPASGS MGYGLPAAVA
AKHLHPDREV ICFAGDGCFL MHGQEFATAV RYGLPLIVLV INNNIYGTIR MHQEREYPGR
VSATDLTNPD FAALARAYGG HGETVARTEE FADAFLRARE SGKPAIIEVK LDPEAITPTR
TLSEIRKG
|
|---|
| |